CCCCCCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCGTGAAGTTCCTTTAAAAAATCAACTTTTGGGAAATAT
GCTAATAAGATTACTTCCCTAAAAAATGCTCAAAATTGGTAATTGCCTTA
TCAAATCTCATAAGATTTGATTTACCAAGGTAGATGATAGAAATACTTGA
GAAAGGGGTCCCCAAGCTAAATGAAAACTATATTAATAATGCAGAAAATA
AGTATGCTAATTTCTAAATGATCTAAAATTTACAAATTTCTGTCTGGACT
AGGACAACAGAAACAACCTAAATCAGACAAAAACGAATAGCTATAACCTG
TGACCCAACAGTATTTATAAGTTAATACAGGAGTTGAAGAGATGACTCAG
TGGGTAAAAATCTTTAGAGAACATGTAGAAATTTATCCTACACATTTTTT
GTAGGGATATATCCAAGTAATTTATAGTTCAATTAAAAATGATGGTTAGT
GTTCAGGGGAAATCATAGAAATGGACTGTAAATTGGTAAAAGATAGAGGG
TACTAACATATACTTACCTATAATGTCTTCTATATATGATAGGTGCTGCA
CCTGTGAAATAGCAACCATAAAACCATCTTAATAATACCTGCACAATGAC
AATACCAGTGGATATGCCAGTGTAGATGGTCAAGTCTTACAAGGCTCCAA
GAGTAGATGAAAGGTGATAAGAAATTGATGA

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAATGCATGAAGGTAAAAGACAGCATG
CTGGACTGGCAAGATGGCTTAGGGAGTAAAGCACCTGGGTTTTTAAGTGT
GAGGACCTAAGTTCAGATCTCCTGAACTCAAATAAAATCTGAGAGCCTGG
GTGTGTGTGAGTACCAGCAAGAGACAGAAAACAGAGACAGAAAACAGAGA
ATGGACAATCTAAAGAAGCTCAAAGGTGGCTGTGCTTCAAACAAGGTGGA
AGGTGACAGCTAACACCAGAAGTTTCCCTTTGACCTCCACATTTGTCCCT
TGCCATATGTCTGTATTTGTACACATGTACACATATATCCATACCAAGCA
CACATGCATGCATATCATATCCATCCAGATGTGTGCACAAAGATTAAGTA
AGTAAGTAAATAAATAAATAAATACCAACATATTTTAGCAGGTGAGTTTT
AGTGATATAATTATCTTTCTGCTTCAAGAATCTAGGCAATGTGAAAATAA
CAGGTTTTCTGTTTGATAGAATTCCTCTTAGCCATGATGGTAGTCAAGGA
TCTACCAATTTTTCAATTTGCATATTGAGATCTAATAAATAAAACTCAGC
CTTCCAAATATTAATGCATGTTTCTGCTAACCAATCTCCATTTTCAAAGG
TAAGACACTGCATTGTAATG

Query= MSMg01no110_n11.b1 MSMg01no110_n11.b1 CHROMAT_FILE:
MSMg01no110_n11.b1 PHD_FILE: MSMg01no110_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:33 2005
         (550 letters)



>mm_chr3_43032521_43033472
          Length = 952

 Score = 1006 bits (520), Expect = 0.0
 Identities = 541/548 (98%), Gaps = 2/548 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcgtgaagttc-ctttaaaaa-atcaacttttgggaaatatgctaataagattact 62
           |||||||||||| ||  |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 752 gaattcgtgaagctcattttaaaaacatcaacttttgagaaatatgctaataagattact 693

                                                                       
Query: 63  tccctaaaaaatgctcaaaattggtaattgccttatcaaatctcataagatttgatttac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tccctaaaaaatgctcaaaattggtaattgccttatcaaatctcataagatttgatttac 633

                                                                       
Query: 123 caaggtagatgatagaaatacttgagaaaggggtccccaagctaaatgaaaactatatta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 caaggtagatgatagaaatacttgagaaaggggtccccaagctaaatgaaaactatatta 573

                                                                       
Query: 183 ataatgcagaaaataagtatgctaatttctaaatgatctaaaatttacaaatttctgtct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ataatgcagaaaataagtatgctaatttctaaatgatctaaaatttacaaatttctgtct 513

                                                                       
Query: 243 ggactaggacaacagaaacaacctaaatcagacaaaaacgaatagctataacctgtgacc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ggactaggacaacagaaacaacctaaatcagacaaaaacgaatagctataacctgtgacc 453

                                                                       
Query: 303 caacagtatttataagttaatacaggagttgaagagatgactcagtgggtaaaaatcttt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 caacagtatttataagttaatacaggagttgaagagatgactcagtgggtaaaaatcttt 393

                                                                       
Query: 363 agagaacatgtagaaatttatcctacacattttttgtagggatatatccaagtaatttat 422
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agagaatatgtagaaatttatcctacacattttttgtagggatatatccaagtaatttat 333

                                                                       
Query: 423 agttcaattaaaaatgatggttagtgttcaggggaaatcatagaaatggactgtaaattg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 332 agttcaattaaaaatgatggttagtgttcaggggaaatcatagaaatggactgtaaaatg 273

                                                                       
Query: 483 gtaaaagatagagggtactaacatatacttacctataatgtcttctatatatgataggtg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gtaaaagatagagggtactaacatatacttacctataatgtcttctatatatgataggtg 213

                   
Query: 543 ctgcacct 550
           ||||||||
Sbjct: 212 ctgcacct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 952
Length adjustment: 10
Effective length of query: 540
Effective length of database: 942
Effective search space:   508680
Effective search space used:   508680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)