CTTTATANNNNNAGCAGTGGGCGCTATAGACTCCTATAGGGAGAGGATCC
GCGGAATTCTACATGCAGATCAGNCCGTATGAGGACAGAGTGAGACATTG
CTGTAAGAAGGAAACCCTTGAAATTGGACCTGGCTTGAGCATCTGAGACC
TCAAAGCCCACCTGAAGTGAAATATTTTCTCCAGCAAAGCCACTCCTACT
CTTACAAGGCTGTACCTCCTAATAATGCTACTTTGGCCTATGGACCTAAG
GGGGCTACTTTCATTCACCACAACATCTAAGCTTATATTGTCTCGATTCA
AACTATTAACCAGGAAAATGTCTTCTCAATATCTCAGCATTTTTTTATTA
TCATCATATGATTATTATACAAATTAATAATATATATATAAGATATAGGT
TTCTGTTTCTGTACATATAACAAGCACATTAGGGAATTTATCGAATGTAT
TATGTCAAACATTTGCGTTTTATATGAGAATGTTCAAAATCGTCTTTTCT
AGCTATTTTGAAATATGCAGTAAAGCACTATTTGACAAAGGTTTGAAAAT
CACCAAAGTAGATGACAGTGGGCTTGATACTTTCAAAGAGCATACAGCAA
CTGTTTGAATATCCTCTTACAACTCTATTTGGGTCCTTAATAAGGACCCC
CCCCTTTGTATCAATTACTTGAGTATATGATGGTACTGGGGCCTGCAGTG
ATGGGTTTAAGAGATCTTTTATCACATAGAAAGGTTAAGCCCAATAGCTT
CCTGTAAGTTTCCTGTGAGAATTTTGTTAGGATAAAGTTGGAGTGTGCTT
GTGTTTGTAGATTGTTAGCAATGATCACATGCAATACTGCCAGATTGAAG
GATGTTTCTTATTTGAATAATGAAAATGCCAATATAAACCACCATTTAGC
CTTCTTTCTGGAAGTCCAAAAGATTCCAAATTTTCTATACCTCCCTTTCA
AATTTAATGTATGCCCTTCCCTTTATTTGTTTCTGTTTAAAACACAATTC
ATTCAAATTTTGGTTTCCAAAGGATTCAAATTTTTCCCTTTGTCTTTGTC
TATCACTTTAACTATTTCTTTTTTTTACCCTTTATTTGTTATAATCAGGC
TTTCTCTTTGTTCCTCTAATCTTAAATTTCTCCCTTCTTTTTTGCTTTAA
TGTTCCCATACCTCTTCTCTCTATTTCTTTTTCTT

CGGTTTTTTNNNAATCCAAGGTGGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAGGGTCTTGGAAGCTACTGC
TTGTCTTCCCTGACCCTTTATGGATGAGTCTTCCAAAAATGAGCTAGCAG
AATCCTCCTCTGAGAGATAGTATTGTTACACTTTCAGAGTCTAGAGCCTA
CATACCTACTCCTCAGTGAACCTCAGTACCCAAGTCTGTGGGTTTCAATC
AATTCCTTCTTCATCTGTCTAAAGTGGTTTCTGAATCCTAGTTTCAAGCC
TGAATGATCAACCTGATCAAACCTCAGCTTCCTCACTTGGAAATTGGGGC
AAATAGGTGTTTGTTTAATGGGAGAACTAAATCAGATGGCTTCTGAAGAA
TGTTTAACTCAGCATGCAGCAGAGCAAGGCCCTAATATATATTTAAAGGA
GTTATTTTTGTATTAGCCTGTTCTCAGACAATCATGTAGCTGAGTTAAAT
TCAGCCACAAGTTGTCAGTCGTGGCCAACCAAGCTCTTTCAGCCCTTGTT
TGGGTTACATGCATAAGTGGTGCCTGCTCTACTGTTTTACAAAGCCCTAA
AGTCTTCTTATGTCAGTTCCAACAGTCAAAAATGGTTCTATGCTCAGTTA
AACTGTGCTAAATCTAATGTATTCATATTTTTTTATTTCAACAATAGGAA
AGACTGAGATGAGAAACTTCTAATCTCCAGATTGCAACAACAACAAAGCT
GTAAAAATAGGGTTGTTTTGTAAAGAGGGTTGTGGGTGCGAACTGAAAGT
TCCAAAAAAGAATCAAACCTGTGTTATACATTGTGGAGAGCCGGTACTTG
CTGCGAGCAATCGCGTGTGTGCCGCCAGTAATCTCTGAGGAGAGCCCTGT
GTGCCGCGAGCAATCGCCATTATAAAATGGCGCGGGCCTCTGCTGTGCCT
ACTAGTAAACAAGCCTTTGTCGCAGGTGCGAGAGTGAATTCCCCCCTATC
CCTTCCCATTCTCGGGGTGTAATAGTGGGGGGGATGGGCAAGGTAACGAT
TCGGGAGGTTGTTCCACCCTTTCCAGGGGCTTGAAACTCTCCACCTGGGG
GTTATTAAAAACACCGCCCTTTTCCCCGGTTTGGAAACTCTTCCGGAAAA
ACTTGGCTTATN

Query= MSMg01no111_e18.g1 MSMg01no111_e18.g1 CHROMAT_FILE:
MSMg01no111_e18.g1 PHD_FILE: MSMg01no111_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:25 2005
         (743 letters)



>mm_chr3_158502382_158503524
          Length = 1143

 Score = 1400 bits (724), Expect = 0.0
 Identities = 739/744 (99%), Gaps = 2/744 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttggaagctactgcttgtcttccctgaccctttatggatgagtcttccaaaaatgagct 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 943 cttggaagctactgcttgtcttccctgaccatttatggatgagtcttccaaaaatgagct 884

                                                                       
Query: 61  agcagaatcctcctctgagagatagtattgttacactttcagagtctagagcctacatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 agcagaatcctcctctgagagatagtattgttacactttcagagtctagagcctacatac 824

                                                                       
Query: 121 ctactcctcagtgaac-ctcagtacccaagtctgtgggtttcaatcaattccttcttcat 179
           ||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 823 ctactcctcagtg-actctcagtacccaagtctgtgggtttaaatcaattccttcttcat 765

                                                                       
Query: 180 ctgtctaaagtggtttctgaatcctagtttcaagcctgaatgatcaacctgatcaaacct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ctgtctaaagtggtttctgaatcctagtttcaagcctgaatgatcaacctgatcaaacct 705

                                                                       
Query: 240 cagcttcctcacttggaaattggggcaaataggtgtttgtttaatgggagaactaaatca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 cagcttcctcacttggaaattggggcaaataggtgtttgtttaatgggagaactaaatca 645

                                                                       
Query: 300 gatggcttctgaagaatgtttaactcagcatgcagcagagcaaggccctaatatatattt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gatggcttctgaagaatgtttaactcagcatgcagcagagcaaggccctaatatatattt 585

                                                                       
Query: 360 aaaggagttatttttgtattagcctgttctcagacaatcatgtagctgagttaaattcag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aaaggagttatttttgtattagcctgttctcagacaatcatgtagctgagttaaattcag 525

                                                                       
Query: 420 ccacaagttgtcagtcgtggccaaccaagctctttcagcccttgtttgggttacatgcat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ccacaagttgtcagtcgtggccaaccaagctctttcagcccttgtttgggttacatgcat 465

                                                                       
Query: 480 aagtggtgcctgctctactgttttacaaagccctaaagtcttcttatgtcagttccaaca 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aagtggtgcctgctctactgttttacaaagccctaaagtcttcttatgtcagttccaaca 405

                                                                       
Query: 540 gtcaaaaatggttctatgctcagttaaactgtgctaaatctaatgtattcatattttttt 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gtcaaaaatggttctatgctcagttaaactgtgctaaatctaatgtattcatattttttt 345

                                                                       
Query: 600 atttcaacaataggaaagactgagatgagaaacttctaatctccagattgcaacaacaac 659
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 344 atttcaacaataggaaagactgagatgagaaacttctaatctccagattgcatcaacaac 285

                                                                       
Query: 660 aaagctgtaaaaatagggttgttttgtaaagagggttgtgggtgcgaactgaaagttcca 719
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aaagctgtaaaaatagggttgttttgtaaagagggttgtgggtgcgaactgaaagttcca 225

                                   
Query: 720 aaaaagaatcaaacctgtgttata 743
           ||||||||||||||||||||||||
Sbjct: 224 aaaaagaatcaaacctgtgttata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 743
Length of database: 1143
Length adjustment: 10
Effective length of query: 733
Effective length of database: 1133
Effective search space:   830489
Effective search space used:   830489
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)