Query= MSMg01no111_h05.b1 MSMg01no111_h05.b1 CHROMAT_FILE:
MSMg01no111_h05.b1 PHD_FILE: MSMg01no111_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:47 2005
(325 letters)
>mm_chr3_55059367_55060090
Length = 724
Score = 559 bits (289), Expect = e-164
Identities = 315/333 (94%), Gaps = 17/333 (5%)
Strand = Plus / Plus
Query: 1 tatttttgtttttccttttttccccatcccaagacgccagtctgtataagaagtgagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatttttgtttttccttttttccccatcccaagacgccagtctgtataagaagtgagaaa 260
Query: 61 tggtgggttttgttttaactcagtctcaatcattcttccattgatttgaaaagcataggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtgggttttgttttaactcagtctcaatcattcttccattgatttgaaaagcataggc 320
Query: 121 aattcttgcctctatgtagaaaatgtgaaataaatgactgcatgggggggggggatgggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 aattcttgcctctatgtagaaaatgtgaaataaatgactgcatgggggggggg-atgggt 379
Query: 181 tcccatgggtgtaaatttgaaatcctctttatcttcttcaggtgaaagctatgtctgcgg 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 380 tcccatgggtgtaaatttgaaatcctctttctcttcttcaggtgaaagctatgtctgcgg 439
Query: 241 ctccatcgagccctttaagaagctggagtac--------tttttttttgtgaaccccaac 292
||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 440 ctccatcgagccctttaagaagctggagtacaccaagaat--------gtgaaccccaac 491
Query: 293 tggtcagtgaacgtcaagaccacctcagcctcc 325
|||||||||||||||||||||||||||||||||
Sbjct: 492 tggtcagtgaacgtcaagaccacctcagcctcc 524
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 724
Length adjustment: 9
Effective length of query: 316
Effective length of database: 715
Effective search space: 225940
Effective search space used: 225940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_h05.g1 MSMg01no111_h05.g1 CHROMAT_FILE:
MSMg01no111_h05.g1 PHD_FILE: MSMg01no111_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:47 2005
(345 letters)
>mm_chr3_55232980_55233724
Length = 745
Score = 559 bits (289), Expect = e-163
Identities = 340/377 (90%), Gaps = 32/377 (8%)
Strand = Plus / Minus
Query: 1 tagtatgttcagctgccagacctagagtggagctaggcatgcttccctgggaagggactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tagtatgttcagctgccagacctagagtggagctaggcatgcttccctgggaagggactt 390
Query: 61 tgcaacagaaaggagggagttgctccagcctgggtgtggaagaaatgctagaatgttcta 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 389 tgcaacagaaaggagggagttgctccagtctgggtgtggaagaaatgctagaatgttcta 330
Query: 121 agcatataatgatataatactttcccctacttcaaggccacaaaagtactcagagtgttc 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agcatataatggtataatactttcccctacttcaaggccacaaaagtactcagagtgttc 270
Query: 181 caggaggactcagagggagagcagaaggaaggccatgcaaagccctgcacatacacatcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 caggaggactcagagggagagcagaaggaaggccatgcaaagccctgcacatacacatcc 210
Query: 241 caaatattttccttcctccctccctc--tc------------------------------ 268
||||||||| ||| |||||||||||| ||
Sbjct: 209 caaatatttccctccctccctccctccctccctccctccctccctccctccctccctccc 150
Query: 269 tccctccctctctctttctctctctttccctctgtctctcctttccttcttcctttctcc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tccctccctctctctttctctctctttccctctgtctctcctttccttcttcctttctcc 90
Query: 329 ccagcctgatgtagctg 345
|||||||| ||||||||
Sbjct: 89 ccagcctgctgtagctg 73
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space: 247296
Effective search space used: 247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
