BAC Information

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BAC

Clone NameMSMg01-112F21
Chromosome3 (Build37)
Map Location 103,177,793 - 103,178,041
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433633, Ngfb, Tspan2, Tshb, Sycp1, LOC668425, LOC100043517, Nr1h5, 5730470L24Rik, Csde1, Nras, Ampd1, Dennd2c, Bcas2, Trim33
Downstream geneSyt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452, Rsbn1, Phtf1, Magi3, EG433634
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112F21.T7 (MSMg01no112_f21.b1)MSMg01-112F21.TJ (MSMg01no112_f21.g1)
ACCAG324797AG324798
length743742
length of high quality
(start - end)
595 (42 - 636)249 (74 - 322)
definitionCHROMAT_FILE: MSMg01no112_f21.b1 PHD_FILE: MSMg01no112_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:30 2005CHROMAT_FILE: MSMg01no112_f21.g1 PHD_FILE: MSMg01no112_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAA
TTCTCCTCTGATTACCAGACTGGGAGGAAGAAGCAGCTCATTATGAGAAA
AAAGGGTACCAGCCAGGTAAAGTGCTAGCTAATCAGTTAAGGAAGCCAAA
AGCGGCTGGCGAAGGCCAGTTTGCTGATTGGCCTCAGGGCAGTCGGCTTC
AAGGTCCGCCCTATGCGGAGTCCCCGCCCTGCGTAGTGCGTCAGCCCTGC
GCAGAGAGACAATGCGCAGAGAGGCAATGCGCAGACTCATTCATTCCCAG
AGAGGAACAAAGGAAAATACAACAGGCATTTCCAGTCTTTGAAGGAGCCG
AGGGTGGGCGTGTCCACGCTCCGGTAGAATACGTACAGATTAAAGAACTT
GCCGAGTCGGTCCGTAAATACGGAACCAATGCTAATTTTACCTTGGTGCA
GTTAGACAGGCTCGCCGGCATGGCACTAACTCCTGCCGACTGGCAAACGG
TTGTAAAAGCCGCTCTCCCTAGTATGGGCAAATATATGGAATGGAGAGCT
CTTTGGCATGAAGCTGCACAAGCGCAGGCCCGAGCAAACGCAGCTGCTTT
GACTCCAGAGCAGAGAGATTGGACTTTTGACTTGTTAACGGGCCAGGGAG
CTTATTCTGCTGATCAGACAAACTACCATTGGTGAGCTTATGCCCAGATT
TCTTCCACGGCTATTAGGGCCTGGAAGGCGCTCTCCCGAGCAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTACGAAAATACCCGTGGGCTCAGACTCCTAAACCAACCC
CTTGCATGTCATATTGTGTCAAGGAGAACGCTACTGTTGTCCCCATTTCT
CAGACAAGCGCATTCAGACGCCAGGTGGTTGTTACAGAACAGATGCTCAT
TTCTCTATTAAAGGAAGATCTAGCCTAAAAGCAGGCAAATGGATGTACGG
ATCTTCTAACAAGCAAGAGGGAACCCTTGCCCATACCATGAGGGAGCACA
AAAAGCAGATGCAACCTCCATGGCTGCTTTGAGGCAGCAATGGCATTGTA
GGGGCTACACGATGTGTTGCACCGCATTAGCCTGGGGTGCACACATGGGA
AGCCCACACCAGGCTGGCCCAGCTTTTGGGGTAGCTACTTCTTCCCTCAG
TGTAGGAAGGTTTGGAGGAACAAATGTCACAGAAGGTTGTGTGCAGCCAC
ACAAGGCATGATGGTAGCGCAGCACATTGAGCAGCTACAGCAGTAGTAGC
CAATGGCCTCTAACCCCGGTCAGGAGAGCTGGAGTGTATGAGTCTGGCTC
AACACCACTTTGGAGTATCACTCCAATCCCAGGACATGTCATTAAGTTGC
TATGGTGGTGGGTATGTATCCTTGTGCGTGCTAGACAAGCACTCTGCTAA
CCAAGCTGAATTCCTAGCTGCTTCCCTTACATCCATCCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_f21.g1 MSMg01no112_f21.g1 CHROMAT_FILE:
MSMg01no112_f21.g1 PHD_FILE: MSMg01no112_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:30 2005
         (249 letters)



>mm_chr3_103177593_103178241
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgtgggctcagactcctaaaccaaccccttgcatgtcatattgtgtcaaggagaacgcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cgtgggctcagactcctaaaccaaccccttgcatgtcatattgtgtcaaggagaacgcta 390

                                                                       
Query: 61  ctgttgtccccatttctcagacaagcgcattcagacgccaggtggttgttacagaacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ctgttgtccccatttctcagacaagcgcattcagacgccaggtggttgttacagaacaga 330

                                                                       
Query: 121 tgctcatttctctattaaaggaagatctagcctaaaagcaggcaaatggatgtacggatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgctcatttctctattaaaggaagatctagcctaaaagcaggcaaatggatgtacggatc 270

                                                                       
Query: 181 ttctaacaagcaagagggaacccttgcccataccatgagggagcacaaaaagcagatgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttctaacaagcaagagggaacccttgcccataccatgagggagcacaaaaagcagatgca 210

                    
Query: 241 acctccatg 249
           |||||||||
Sbjct: 209 acctccatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)