BAC Information

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BAC

Clone NameMSMg01-112G19
Chromosome3 (Build37)
Map Location 131,505,910 - 131,687,272
singlet/doubletdoublet
Overlap geneOlfr375-ps1
Upstream geneLOC546811, LOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1
Downstream geneDkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112G19.T7 (MSMg01no112_g19.b1)MSMg01-112G19.TJ (MSMg01no112_g19.g1)
ACCAG324841AG324842
length777726
length of high quality
(start - end)
185 (73 - 257)173 (77 - 249)
definitionCHROMAT_FILE: MSMg01no112_g19.b1 PHD_FILE: MSMg01no112_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:34 2005CHROMAT_FILE: MSMg01no112_g19.g1 PHD_FILE: MSMg01no112_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,687,088 - 131,687,272)(131,505,910 - 131,506,082)
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCTCAGTTGTTCCCCATGCAGGGGGGTTTCAGGAAGTAGAGCTGGGGG
AAACCTCACTCTCCAGATCATGCCCCTGGTGGTGGTGGAAAAAGATCCCC
CGTTCAGCCCTGGGCAAAGTGAGTCTGAAGAATCTCTGTGAGCCTTTGAT
GTGCCCATGCCCATCCTCCATATGGCTTACTTTTAAAGCTGGGTTGGGAG
TCCGGGTGTAAAAAATTTGACAGAGGATGGAGAAAAAAGAGTCCATATAA
TCCCTCATTCATTTGTTCTGATTCTTACATTGAGGTTTTTAGAGCAAGAG
GTTTGAAACTATTTTTTTTTTACCCCGCCCCCCGCCAGAGAAGGAAGAAT
TTGCCTTTTTTTATCTTGAACACCCCCTTGACAAAACCAACATGTATGTC
TTTCTAACCTTCTCTGTTGAAGTTACAAGAAGGTAGTTGATACTTTTTAC
AATGCTAAAGCTTCATATCATTTGTATTTTTTTTCCTATTTACGCCTCCC
CGCATTCGTTGCCATTATTTCACTTTTTTTTCATGCCCTTATTTCCCCCT
CCCATTTTTGTTCCACACATTCTTCTTCCATCATTCCCTTCATGGTATTT
GGTTTCCACTGTATTTTTTTACCCCCTATTTTTGTTCCTACCCCGCTCTC
CTTTTCTACCTTTTTCCCTCTCCTCACCTTGTATTTCTGTTCTCCGCCCT
TTCTTATTTTCGCCTGTTCTCTCCTCC
CGAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATAAGAGGATTTAATTATTGATA
GGTACTTTTTCTTGAAAGAACTGTTATTGAATCCTGGAAGTGAGCTAATT
ACGCCTATATGTTACTCTGAAATCATGAGGATGAATATGTATGTATTTTA
TTAAATAGAGTGAGAAAGAAGAAAGATGGAACTATGCTATGCGAAATAGG
AGTCAAAGCGGAACAAAATTGTTTATTGGAGTATGTGTCTATATTCCAAC
AATATACATATAGGTATATATATTCATATATATCATAACCATTAGAAAAT
ATTGTTTTTATATTTTTCTTTATAGGATTATGTTTTTGTTGTATATCTTA
ATACCGAGATTAAATATATGCCTTCTTGTTCAAGCCACCTTTGTATCATG
CTCAAAGTCAAATGGTTCCCAAGCAATATTAATGATTCCTCATTCATTAC
TAATAGAATTACAGTTTCATCTGTCCCTTCTCCCTTTTTTCTCAACTGTT
TTTCTTTTACCCTTACCATGCGTGGACTGTAACTTGTTATTAGAGTGTAT
ACCCATTTGATTACAGCCCTTTCTATATTTTACACTCCTCAAAAACGCAC
TTTGTACTTCTGATACAAGTCAAGTTTCATTCATACAATTTTTTTTTTTC
GCAACAATCTTGTTGGCACTTCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_g19.b1 MSMg01no112_g19.b1 CHROMAT_FILE:
MSMg01no112_g19.b1 PHD_FILE: MSMg01no112_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:34 2005
         (185 letters)



>mm_chr3_131686888_131687472
          Length = 585

 Score =  311 bits (161), Expect = 1e-89
 Identities = 179/185 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggggggtttcaggaagtagagctgggggaaacctcactctccagatcatgcccctggtgg 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||   |||||||
Sbjct: 385 ggggggtttcaggaaggagagctgggggaaacctcactctccagatcatgtgtctggtgg 326

                                                                       
Query: 61  tggtggaaaaagatcccccgttcagccctgggcaaagtgagtctgaagaatctctgtgag 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggtggaaaaagatcccccattcagccctgggcaaagtgagtctgaagaatctctgtgag 266

                                                                       
Query: 121 cctttgatgtgcccatgcccatcctccatatggcttacttttaaagctgggttgggagtc 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 265 cctttgatgtgcccatgcccatcctccaaatggcttacttttaaagctgggttgggagtc 206

                
Query: 181 cgggt 185
           |||||
Sbjct: 205 cgggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 585
Length adjustment: 8
Effective length of query: 177
Effective length of database: 577
Effective search space:   102129
Effective search space used:   102129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no112_g19.g1 MSMg01no112_g19.g1 CHROMAT_FILE:
MSMg01no112_g19.g1 PHD_FILE: MSMg01no112_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:35 2005
         (173 letters)



>mm_chr3_131505710_131506282
          Length = 573

 Score =  335 bits (173), Expect = 1e-96
 Identities = 173/173 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataagaggatttaattattgataggtactttttcttgaaagaactgttattgaatcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataagaggatttaattattgataggtactttttcttgaaagaactgttattgaatcctg 260

                                                                       
Query: 61  gaagtgagctaattacgcctatatgttactctgaaatcatgaggatgaatatgtatgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagtgagctaattacgcctatatgttactctgaaatcatgaggatgaatatgtatgtat 320

                                                                
Query: 121 tttattaaatagagtgagaaagaagaaagatggaactatgctatgcgaaatag 173
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttattaaatagagtgagaaagaagaaagatggaactatgctatgcgaaatag 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space:    93225
Effective search space used:    93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)