BAC Information

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BAC

Clone NameMSMg01-112K01
Chromosome3 (Build37)
Map Location 70,608,149 - 70,713,490
singlet/doubletdoublet
Overlap geneEG625901
Upstream geneLOC100041334, 1110032A04Rik, Gm414, LOC100041384, LOC625868, LOC670542
Downstream geneEG667377, LOC667385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112K01.T7 (MSMg01no112_k01.b1)MSMg01-112K01.TJ (MSMg01no112_k01.g1)
ACCAG324988AG324989
length730737
length of high quality
(start - end)
234 (128 - 361)365 (75 - 439)
definitionCHROMAT_FILE: MSMg01no112_k01.b1 PHD_FILE: MSMg01no112_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:50 2005CHROMAT_FILE: MSMg01no112_k01.g1 PHD_FILE: MSMg01no112_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,608,149 - 70,608,381)(70,713,126 - 70,713,490)
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAA
TTCAACACTGCTTTACGTCCATAACCAGGGACCTCCATCTCCAGCGACTG
GAGAGGAGAGGACTGCATTAAAGCAATGGATAGGAGAGCTGCACCTGTCA
GAGTCATGGACACAAACATACTCAGGCAAGTATTAAGTGTAACCGCTATA
AATACAGCTAGGTGAGAAGAGAGCAACCACCACCCCAAGGCGAATACAAG
CTAGAGTCATCCAGCATTCCCACTGAGAACTTCAGACATGGAAATATTGT
GCGGAGACATGATAACCCATCATCCCATGGAGAACAATGTGGCATGGTGG
GGAAAGAGGCTAAGTACTAGAAGTGGCAACCCAAATAAGGACTGTAAATC
TGCTACAGAAAGTTGCCACTCTTTGCAGGCAATTAAGTTATTTTTAACTA
CCTGTCTTCTTGTACAGCGATCTGCACAATATAATGTGTGAAGAGAAATA
TTTTCACCGCGTCTAACCATACCCACTCTTCCAGTGATGGCATCAATTTC
CTATTTTATCTATTTTGCACCCCAATTTTCCCTTGCCTTTACGTTTGTAT
TCCCATGTTCTTGTTTTCGCTCTAGCTTTGCCTCGCCTGAATATTTCTTC
ACTATATTTTTTTTCTCCGCCCCTTATTTCATGCCCGTACCCCCTGTTTA
CTTTTCCTCGTCTCCGTGCCTCACTCCCCT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGATCAAAAGAAGACATTTCAGAA
GGTGTTATAAGACAACTAAGTAGACTTTAGATATATGCTTTCTGCTATCA
TTTATTTAGCTTTATGGACTGTTTATGTGGAGACTAAGAGGTGGAGGAAA
ATATCTCATGAATATGACAAACAAAAGAACAAAGGTAGCATATTTAATCA
TAAAAGCAGGTTTTTATACTTAAAGGATTTGTAAGAGAAATACATTTACT
TCATAATGATTAAGTGGATAATGAATCAAAAAGGAGGGTAAAAATAGTTA
CTGTGCACAAAACACAATGTTACTCATGCAGGTATGAAAATTAATATTTA
AACCCAATATTTGTCCTTTGAAAATAATCTAAATTAATAAATAGTTTCAA
CATACCCACACACGTGCGCATATATATTGACAATGACACACCTACTGTCC
ATGTGAGACACTTACCCAGTGACTTAAAGCGCAGAATAGATGATAATACC
GAATGCTCAGGGCACTTTAATGCCTTCACCTGACCAGCAGATAAGGCAAC
TCCATACCGGAGTAATAAAAGCATACCACACTGAAATAGAACTCTATAGA
CATTCTATCCCCCAGCAATGCAATACCCCATTATTTCCCCACCCCTCGTA
CAACTTTTCACGAATATCTATAAGGCCCCCCAATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_k01.b1 MSMg01no112_k01.b1 CHROMAT_FILE:
MSMg01no112_k01.b1 PHD_FILE: MSMg01no112_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:50 2005
         (234 letters)



>mm_chr3_70607949_70608582
          Length = 634

 Score =  427 bits (221), Expect = e-124
 Identities = 230/233 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggataggagagctgcacctgtcagagtcatggacacaaacatactcaggcaagtattaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggataggagagctgcacctgtcagagtcatggacacaaacatactcaggcaagtattaag 260

                                                                       
Query: 61  tgtaaccgctataaatacagctaggtgagaagagagcaaccaccaccccaaggcgaatac 120
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtaaccgctggaaatacagctaggtgagaagagagcaaccaccaccccaaggcgaatac 320

                                                                       
Query: 121 aagctagagtcatccagcattcccactgagaacttcagacatggaaatattgtgcggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagctagagtcatccagcattcccactgagaacttcagacatggaaatattgtgcggaga 380

                                                                
Query: 181 catgataacccatcatcccatggagaacaatgtggcatggtggggaaagaggc 233
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 catgataacccatcatcccatggagaacaatgtggtatggtggggaaagaggc 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no112_k01.g1 MSMg01no112_k01.g1 CHROMAT_FILE:
MSMg01no112_k01.g1 PHD_FILE: MSMg01no112_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:50 2005
         (365 letters)



>mm_chr3_70712926_70713690
          Length = 765

 Score =  675 bits (349), Expect = 0.0
 Identities = 361/365 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgatcaaaagaagacatttcagaaggtgttataagacaactaagtagactttagatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctgatcaaaagaagacatttcagaaggtgttataagacaactaagtagactttagatat 506

                                                                       
Query: 61  atgctttctgctatcatttatttagctttatggactgtttatgtggagactaagaggtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 505 atgctttctgctatcatttatttagctttatggactgtttatgtggagattaagaggtgg 446

                                                                       
Query: 121 aggaaaatatctcatgaatatgacaaacaaaagaacaaaggtagcatatttaatcataaa 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggaaaatatctcatggatatgacaaacaaaagaacaaaggtagcatatttaatcataaa 386

                                                                       
Query: 181 agcaggtttttatacttaaaggatttgtaagagaaatacatttacttcataatgattaag 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtaggtttttatacttaaaggatttgtaagagaaatacatttacttcataatgattaag 326

                                                                       
Query: 241 tggataatgaatcaaaaaggagggtaaaaatagttactgtgcacaaaacacaatgttact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggataatgaatcaaaaaggagggtaaaaatagttactgtgcacaaaacacaatgttact 266

                                                                       
Query: 301 catgcaggtatgaaaattaatatttaaacccaatatttgtcctttgaaaataatctaaat 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 265 catgcaggtatgaaaattaataattaaacccaatatttgtcctttgaaaataatctaaat 206

                
Query: 361 taata 365
           |||||
Sbjct: 205 taata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)