Query= MSMg01no112_n13.b1 MSMg01no112_n13.b1 CHROMAT_FILE:
MSMg01no112_n13.b1 PHD_FILE: MSMg01no112_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:07 2005
(553 letters)
>mm_chr3_33702276_33703229
Length = 954
Score = 1025 bits (530), Expect = 0.0
Identities = 548/556 (98%), Gaps = 5/556 (0%)
Strand = Plus / Minus
Query: 1 gataactgccattgttaaacagaacaatctccataccattttaaagcccaagatgctgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 gataactgccattgttaaacagaacaatctccataccattttaaagcccaagatgctgac 695
Query: 61 tgcttctttcttaatgctgaagcaaaatcatcttcagagaaatttttgctataaagaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tgcttctttcttaatgctgaagcaaaatcatcttcagagaaatttttgctataaagaaaa 635
Query: 121 tgagagtcaaaaatgtaagtactttagaagtacacttcattctgtctctggtagatacaa 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tgagagtcaaaaatgtaaatactttagaagtacacttcattctgtctctggtagatacaa 575
Query: 181 cagtgaaatggtgaatttcaagcaggaaattcgtattacatctatacagccaagtccttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 cagtgaaatggtgaatttcaagcaggaaattcgtattacatctatacagccaagtccttt 515
Query: 241 taaattgttt---atgtgaatattactgttaaatgttagccttaagcatatatatgaact 297
||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 514 taaattg--tcaaatgtgaatattactgttaaatgttagtcttaagcatatatatgaact 457
Query: 298 tttctgtttcctcctctacttgggtcaaatggcatattcctagcattgcttagcatccag 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tttctgtttcctcctctacttgggtcaaatggcatattcctagcattgcttagcatccag 397
Query: 358 accaggaggagataggctcacttcactcaaccttcagtatattcctattgctacggtcaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 accaggaggagataggctcacttcactcaaccttcagtatattcctattgctacggtcaa 337
Query: 418 cgtgttcttcagctatgtagcctctgagctaatccacacccctcaccacctttatcagct 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cgtgttcttcagctatgtagcctctgagctaatccacacccctcaccacctttatcagct 277
Query: 478 aagagaatgcagatctacttttacctttgtaggcctctcattacagacggtggatgagat 537
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 276 aagagaatgcagatctacttttacctttgtaggcctctcattaaagacggtggatgagat 217
Query: 538 tcatctattcctagtt 553
||||||||||||||||
Sbjct: 216 tcatctattcctagtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 954
Length adjustment: 10
Effective length of query: 543
Effective length of database: 944
Effective search space: 512592
Effective search space used: 512592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_n13.g1 MSMg01no112_n13.g1 CHROMAT_FILE:
MSMg01no112_n13.g1 PHD_FILE: MSMg01no112_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:07 2005
(593 letters)
>mm_chr3_33612415_33613409
Length = 995
Score = 1079 bits (558), Expect = 0.0
Identities = 587/600 (97%), Gaps = 7/600 (1%)
Strand = Plus / Plus
Query: 1 ttatcttatgttcatctaaattaattgtcagtggatcatcatattttcatgactggtctc 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatcctatgttcatctaaattaattgtcagtggatcatcatattttcatgactggtctc 260
Query: 61 atttctctttcacattttcagtaagaataaaggggaaataatatttttagctttaagtta 120
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 261 atttctctttcacattttcagtaagaataggggggaaacaatatttttagctttaagtta 320
Query: 121 aaaaaaaa--ctctcagaccaaaattagtaaaattagaaataaaaaggaaacattactaa 178
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaaaaaaactctcagaccaaaattagtaaaattagaaataaaaaggaaacattactaa 380
Query: 179 aaaaaaa-----tactgaggcaattaggagaatcacaggaacatacttttaaaatctata 233
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaaaaaaaatactgaggcaattaggagaatcacaggaacatacttttaaaatctata 440
Query: 234 ttcatataagctagaaaatgtaaaagaacagatgaattcctaaatatatctagatatcta 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcatataagctagaaaatgtaaaagaacagatgaattcctaaatatatctagatatcta 500
Query: 294 taacctgccaaaaataaattaagatgaagtaaataatttaagtagacccataataaccat 353
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 taacctgccaaaaataaattaagatgaagtaaataatttaaatagacccataataaccat 560
Query: 354 tgagttagaatcagtaattgaaacccttctaactagaaaaggcccagaaccagatagata 413
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 tgagttagaatcagtaattgaaacccttccaactagaaaaggcccagaaccagatagata 620
Query: 414 taataaggaactctatgaaactttcaaaaaactgacaccaatgcttctcaaatcattcca 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taataaggaactctatgaaactttcaaaaaactgacaccaatgcttctcaaatcattcca 680
Query: 474 taacatagaaaagaaaagaacatttctaaactttttatggggctagcattactccagtac 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taacatagaaaagaaaagaacatttctaaactttttatggggctagcattactccagtac 740
Query: 534 taacaacagacaaatattcaacaacaaagaaaagtataggccaatctccctgacaaccac 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taacaacagacaaatattcaacaacaaagaaaagtataggccaatctccctgacaaccac 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 995
Length adjustment: 10
Effective length of query: 583
Effective length of database: 985
Effective search space: 574255
Effective search space used: 574255
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
