BAC Information

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BAC

Clone NameMSMg01-113D05
Chromosome3 (Build37)
Map Location 67,680,638 - 67,681,201
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625115, Shox2, Rsrc1, Mlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412
Downstream geneEG208426, EG545531, LOC631379, Schip1, Il12a, LOC639530, 1110032F04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113D05.T7 (MSMg01no113_d05.b1)MSMg01-113D05.TJ (MSMg01no113_d05.g1)
ACCAG325408AG325409
length729709
length of high quality
(start - end)
401 (37 - 437)564 (68 - 631)
definitionCHROMAT_FILE: MSMg01no113_d05.b1 PHD_FILE: MSMg01no113_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:34 2005CHROMAT_FILE: MSMg01no113_d05.g1 PHD_FILE: MSMg01no113_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCACAA
TCGTGACAACATGTGGGGAAGACTCCTCACATCAGAGAACACCATAAAAC
AAAGCCAGAGCTGGGGTCAGGCTATTAAGTTCAAAGACTTGCCTGTATTG
ACTTCTCACACTGACCTGCCACCTCCTAGAAGTTCTACAAATCCTAAAAT
ATTGCCTCCAGCAGGGAACAAGAGTTCAGAAAATTATCCTGTGAGGAACC
TTCTAGAATGTTCTATCTACTGTCTGTCTGCCTGCCTGCTTGCCTATCTG
TCTGTCTCCTTTCTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCCCTCCC
TTCCTCTTTCTGTCTTCCTCCCTCCCTCCCTCCATCCATCACACCCCACT
CACTTCACCCATTATCCCCCCAATTTCCCCTCCCTTTCTTTCATCACCTA
TCACTTATTATTTTCCCCCCCTCCCCCCTTTTTCTTTTCCCTTCTTATAT
CCCCACCCATCCTTTTTCTCTCCTATTTTTTCCCCTCCTCTCCTCACTCC
CCCTCTTTTCTTTTTTCTTTTTTCTTCTTCGCCCCCTCAAAAATTCCACA
TCACTTCCCACCCGCTTTTTTTTCACGGCGTCGTATAAATAAATCTTCCG
CGCTTCTTATGTAAAGTTTGCGACAAATG
ATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTATTTCCAGTTAAACACAGTGTATGTAAAAT
GTGGATTTTAGCGGTCGTTGAAGGGAAGGGAATAAATAATTTCAGCAACT
TGATGATAGTGAAGAGTCCGGTTCTCCTCTTCTATGGATTCCAACTACAC
TGCATCAGAAGAAGTGTGAACAGCTGGCGTTTTGCTGTCACCCTGGGAAC
AGTTAATTTTGTCCTTGTCATAGTCTACCTGCTTGATATTCTATACATCT
TCTCATCAGAGAACTGAAGCAAATATTATATCATGCTCTTTAAAATTAAT
GTGACACCAGAACTCAAGACAATGCCAAAGCAACACACCAGGGCAGGGCG
TTTCTAAGGCACAGCACTCTTTCTCAAAGGCAGTTCTTTATCATATCTTT
CTTATGGCATTTGACACGTTACTGTGAAAGACAAAGGGCCACACAGCAGC
CCAAGAGGGTAGAGGGCAGAGAAGTGAAATTACATGTGCACGTTTGAGTT
TTTAGGTCTTTTCCTTCTGGAAATAAGTCATAGCTTATGTGGGTCTTTCT
GATTTGTTTATTGTTTTGATCCCTAGTTTTATTGGTACTCGAAACCAATT
TTAGTAAATATCTAATAAAAAGATTAACATTAAAAGAAAAGAAAACCAAT
TTTAGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_d05.g1 MSMg01no113_d05.g1 CHROMAT_FILE:
MSMg01no113_d05.g1 PHD_FILE: MSMg01no113_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:34 2005
         (564 letters)



>mm_chr3_67680438_67681401
          Length = 964

 Score = 1029 bits (532), Expect = 0.0
 Identities = 556/564 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttatttccagttaaacacagtgtatgtaaaatgtggattttagcggtcgttgaagggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cttatttccagttaaacacagtgtatgtaaaatgtggattttagcggtccttgaagggaa 260

                                                                       
Query: 61  gggaataaataatttcagcaacttgatgatagtgaagagtccggttctcctcttctatgg 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggaataaataatttcagcaatttgatgatagtgaagagtccggttctcctcttctatgg 320

                                                                       
Query: 121 attccaactacactgcatcagaagaagtgtgaacagctggcgttttgctgtcaccctggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attccaactacactgcatcagaagaagtgtgaacagctggcgttttgctgtcaccctggg 380

                                                                       
Query: 181 aacagttaattttgtccttgtcatagtctacctgcttgatattctatacatcttctcatc 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacagttaattttgtccttgtcacagtctacctgcttgatattctatacatcttctcatc 440

                                                                       
Query: 241 agagaactgaagcaaatattatatcatgctctttaaaattaatgtgacaccagaactcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagaactgaagcaaatattatatcatgctctttaaaattaatgtgacaccagaactcaa 500

                                                                       
Query: 301 gacaatgccaaagcaacacaccagggcagggcgtttctaaggcacagcactctttctcaa 360
           ||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 501 gacaatggcaaagcaacacaccagggcagggcgtgtctaaggcacagcgctctttctcaa 560

                                                                       
Query: 361 aggcagttctttatcatatctttcttatggcatttgacacgttactgtgaaagacaaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggcagttctttatcatatctttcttatggcatttgacacgttactgtgaaagacaaagg 620

                                                                       
Query: 421 gccacacagcagcccaagagggtagagggcagagaagtgaaattacatgtgcacgtttga 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 gccacacagcagcccaagagggtagagagcagagaagtgaaattacatgtgcacgtttga 680

                                                                       
Query: 481 gtttttaggtcttttccttctggaaataagtcatagcttatgtgggtctttctgatttgt 540
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 gtttttaggtcttttccttctggaaataagtcgtagcttatgtgggtctttctgatttgt 740

                                   
Query: 541 ttattgttttgatccctagtttta 564
           ||||||||||||||||||||||||
Sbjct: 741 ttattgttttgatccctagtttta 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)