Query= MSMg01no113_d20.b1 MSMg01no113_d20.b1 CHROMAT_FILE:
MSMg01no113_d20.b1 PHD_FILE: MSMg01no113_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:37 2005
(642 letters)
>mm_chr3_5887092_5888133
Length = 1042
Score = 1226 bits (634), Expect = 0.0
Identities = 637/638 (99%)
Strand = Plus / Plus
Query: 5 gaattctaacagtgatgtaatgatattgcaagattttttgagtttatgagttgagatgag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaacagtgatgtaatgatattgcaagattttttgagtttatgagttgagatgag 264
Query: 65 gtgctgggtcaatatgaccttgatctgggaatttaaaatatttatgactatgcccaacag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgctgggtcaatatgaccttgatctgggaatttaaaatatttatgactatgcccaacag 324
Query: 125 gactttcaggtgtctaggatcttatcagtaaatataaaccagttaacatatacaacaata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gactttcaggtgtctaggatcttatcagtaaatataaaccagttaacatatacaacaata 384
Query: 185 ttcttcctagagaaccctagtttctgcaaacaaataaactttatccatttcatttattga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcttcctagagaaccctagtttctgcaaacaaataaactttatccatttcatttattga 444
Query: 245 aacctaatggaacaaactgagaactcttcttattcattatccaactaatgtcccgtggag 304
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 aacctaatggaacaaactgagaactcttcttattcattatccaactaatgttccgtggag 504
Query: 305 actcatgttcaagttatataagtgcatgattgtgcacacttacaattgtcttttaacatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actcatgttcaagttatataagtgcatgattgtgcacacttacaattgtcttttaacatt 564
Query: 365 tctccaataattccactttcttttccttcatccttttattcaaattatttcatagcaaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctccaataattccactttcttttccttcatccttttattcaaattatttcatagcaaga 624
Query: 425 aaaatgcaagctgtgaacttcactagagtggcacccttaactacataattcactcactac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaatgcaagctgtgaacttcactagagtggcacccttaactacataattcactcactac 684
Query: 485 ttttccccatttgactacttgtgaatatttaagcccatatttattgtgacataattgata 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttttccccatttgactacttgtgaatatttaagcccatatttattgtgacataattgata 744
Query: 545 ttgtacttcagaaactacctctttggtttcattgtacagatttttacatgtttcaatatt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttgtacttcagaaactacctctttggtttcattgtacagatttttacatgtttcaatatt 804
Query: 605 tggagtatttatttcttttctgatgctaatttcatcat 642
||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tggagtatttatttcttttctgatgctaatttcatcat 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_d20.g1 MSMg01no113_d20.g1 CHROMAT_FILE:
MSMg01no113_d20.g1 PHD_FILE: MSMg01no113_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:37 2005
(613 letters)
>mm_chr3_5966216_5967228
Length = 1013
Score = 1178 bits (609), Expect = 0.0
Identities = 612/613 (99%)
Strand = Plus / Minus
Query: 1 tttgtttagctctgagtcccaggggagcgggtgggggagcgtgtgggggacttttgggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 tttgtttagctctgagtcccaggggagcgggtgggggagcgtgtgggggacttttgggat 859
Query: 61 agcattggaaatgtaaatgaaataaatacctaattaaaaaaaatactgatcatgtatcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 agcattggaaatgtaaatgaaataaatacctaattaaaaaaaatactgatcatgtatcag 799
Query: 121 agtgtgtacattttgagctaacattgcagccttcattatcatgattcagttttgcagaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 agtgtgtacattttgagctaacattgcagccttcattatcatgattcagttttgcagaag 739
Query: 181 catttgagagctctaatatttaggatgctgcttactgatttaattgtcatgagccgctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 catttgagagctctaatatttaggatgctgcttactgatttaattgtcatgagccgctgg 679
Query: 241 tacaaactctcaggttttggctaattagtattaagttaagatctagtagtaccaatgcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tacaaactctcaggttttggctaattagtattaagttaagatctagtagtaccaatgcct 619
Query: 301 tgtcagcctacatgcagtcttcatcacaagaacacgtgtaactcaatgagctcatttaca 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgtcagcctacattcagtcttcatcacaagaacacgtgtaactcaatgagctcatttaca 559
Query: 361 ctcttttcaactataacatttatttaggcttcttaagctacagacattttaaaatatttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctcttttcaactataacatttatttaggcttcttaagctacagacattttaaaatatttc 499
Query: 421 ttgagctacctttccagtagacttttacccatcatcatgctctttgttccttgaaaatcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttgagctacctttccagtagacttttacccatcatcatgctctttgttccttgaaaatcc 439
Query: 481 aaatggaaaaagtcatcccattgtgatttattgtttgatatgtattatttgtttattagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaatggaaaaagtcatcccattgtgatttattgtttgatatgtattatttgtttattagt 379
Query: 541 gcttaatatttgattatatttattgggtcttccattattttgctctttgagtaaatgaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gcttaatatttgattatatttattgggtcttccattattttgctctttgagtaaatgaga 319
Query: 601 tcttgaatttatg 613
|||||||||||||
Sbjct: 318 tcttgaatttatg 306
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
