Query= MSMg01no113_e02.b1 MSMg01no113_e02.b1 CHROMAT_FILE:
MSMg01no113_e02.b1 PHD_FILE: MSMg01no113_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:38 2005
(469 letters)
>mm_chr3_28796778_28797646
Length = 869
Score = 766 bits (396), Expect = 0.0
Identities = 451/470 (95%), Gaps = 4/470 (0%)
Strand = Plus / Minus
Query: 2 ctggatagaagcttctcaatgctcacaaatagaggtagcctgatcattttttggattata 61
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 669 ctggatagaagcttctcagtgctcacaaatagaggtagcctgatcattttttggattaga 610
Query: 62 gaatgtttaaaatgaatatactatgaatatacctcattacaatagctcctttactcaaca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gaatgtttaaaatgaatatactatgaatatacctcattacaatagctcctttactcaaca 550
Query: 122 tacaaagcgcaactatacaagtgccccaaaagatgattatttatcccagtaatttaaaca 181
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tacaaagtgcaactatacaagtgccccaaaagatgattatttatcccagtaatttaaaca 490
Query: 182 aataattggaaattatgtcttcctatcaagcattctgatcttactgaaagtgtttgtaag 241
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 489 aataattggaaa-tatgtcttcctatcaagcattctgatcttacagaaagtgtttgtaag 431
Query: 242 aaaccgtaaccttggaagcattgcttttcttctttcatcattatatggagctagtccttt 301
|||| ||||||||||||||| ||||| |||| |||| || |||||||||||||||||||
Sbjct: 430 aaacaataaccttggaagcatcgctttccttc-ttcaccaatatatggagctagtccttt 372
Query: 302 gaaaaattcagatacatataaaatgtgttctgattattttgttgttgttgtttttgctct 361
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gaaaaattcaaatacatatacaatgtgttctgattattttgttgttgttgtttttgctct 312
Query: 362 ctgctttcccttctatcttttaacagaatcattcgcagatttgtgtcttttctattattt 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 311 ctgctttcccttctatcttttaacagaatcattcgcagatttgtgtcttttctattcttt 252
Query: 422 tatgatagactgaatattacatctctgtgtg--tgtggatgtgtgtgtgt 469
|||||||||||||||||||||||| |||||| |||| ||||||||||||
Sbjct: 251 tatgatagactgaatattacatctgtgtgtgcatgtgtatgtgtgtgtgt 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_e02.g1 MSMg01no113_e02.g1 CHROMAT_FILE:
MSMg01no113_e02.g1 PHD_FILE: MSMg01no113_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:38 2005
(535 letters)
>mm_chr3_31697111_31698045
Length = 935
Score = 982 bits (508), Expect = 0.0
Identities = 529/536 (98%), Gaps = 2/536 (0%)
Strand = Plus / Minus
Query: 1 ttgcagttgcctctttcttccctccttagatgtgtgatggtacatccattcca-tcagga 59
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 735 ttgcagttgcctctttcttccctccttagatgtgtgatggtacatccattccact-agga 677
Query: 60 gcatcctcagtggatataaatgagcagtttccttaagaggaaagtgagagctgaaaggag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gcatcctcagtggatataaatgagcagtttccttaagaggaaagtgagagctgaaaggag 617
Query: 120 aaatctgccataatcacaaacagtattctctgatgacagacaggggacttcatattgtaa 179
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 616 aaatctgccataatcacaaacagtgttctctgatgacagacaggggacttcatattgtaa 557
Query: 180 ctatcaatcacagtggggcaatggctgtctgctgctcagtttttggctagacacacttcc 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 556 ctatcaatcacagtggggcaatggctgtctgctgctcagtttttggctagacacgcttcc 497
Query: 240 ctgtgtctgcaaggcttattttcaggaattatagatggttgcctctatgttccattttag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ctgtgtctgcaaggcttattttcaggaattatagatggttgcctctatgttccattttag 437
Query: 300 ttcaggtgtcaggcaaccgaagtttcttcactagcctacatgaaaggcattccaaactat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttcaggtgtcaggcaaccgaagtttcttcactagcctacatgaaaggcattccaaactat 377
Query: 360 tttctaattagtaagtgaaccattgcaaatctctgatgaaggataaattgttcgctagat 419
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 376 tttctaattagtaagtgaaccattgcaaatctctgatgaaggataaactcttcgctagat 317
Query: 420 gtgacgagccattgctagataaagcagtggtcagatgtcttacactgaagatgggaaaac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gtgacgagccattgctagataaagcagtggtcagatgtcttacactgaagatgggaaaac 257
Query: 480 ttgagcacctgtgttacatagccctattgattttcagattgccttactcctgcaca 535
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 256 ttgagcacctgtgttacatagtcctattgattttcagattgccttactcctgcaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
