XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTAGGGAACAAAAAGCCTTACAACACGGGCTCAGAACAGGAAGCCAT
GTGCCTATCTCAGAAAAAAGTGAGCACATGAAAAAGAAAATTCTTGTTTA
GCAGTGGCATATCCCAGGGGAAAAATAACATAAAAAGAGTCAATAGAACT
CTATTCTCTTTCTATTTTTGACTTCATCTACTCTTTGTGCTTATGTGTAG
ATAGTGGAATCCTAACTTACTAAACCATTAAAAACCTTCCCTTGCAAATA
TTACATTTCTTACTGTTTGGTTTCAGGTTTAAGAGCCATATTAGAAACCA
ATGATGGAGCTACTCGAAGAAGAGATCAGTTTAGTGCTCAGTGCCTTTGG
AGCAAAGGGGCACAGGTGGTCCCAAATTCTGGAGCATATGCTGAAGGAAA
GGGAGAAGCCAGCAATATTATCTCTCTTTGACTCTGAGACTTTGCATCTT
GGTGGGAGGGAAACATCAGATGGATCTCTCCAAGAGGAACCACCAACACC
CCCAAACAAGAGCACAGTTGTAAAAGCACTGTGCTCTAAGTGTTGAGATG
AGTCTTACAAGCAAGGTGAAAGATAAAGTTCTCACAGAAACAGGGGTCAA
GGAGACTTCCTGGTGTGGGTGTGAAGTGACAGACAGATGCTAAGTGAAAG
GTCAGGGTTAAAAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATAACTCACTTAAAGAAATACAG
GAGAACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACAC
TGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACAACCAAAC
AGGTAGAAGTCCTTATAGAAAAACAGGAAAACACATCCAAACAGGTGATG
GAAATGAACAAAACCATACTAGACCTAAAAAGGGAAGTAGACACAATAAA
GAAAACCCAAAGTGAGGCGACGCTGGAGATAGAAACCCTAGGAAAGAAAT
CTGGAACCATAGATGCCAGCATCAGCAACAGAATACAAGAGATGGAAGAG
AGAATCTCAGGTGCAGAAGACTCCATAGAGAACATCGGCACAACAATCAA
AGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAACATCCAGGAAATCC
AGGACACAACGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAAT
GAAGATTTTCAACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGA
AGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAG
CCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACCC
ATAATAATCAGAACACCAAATGCACTAAACACAGATAGAAT

Query= MSMg01no114_a05.b1 MSMg01no114_a05.b1 CHROMAT_FILE:
MSMg01no114_a05.b1 PHD_FILE: MSMg01no114_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:36 2005
         (599 letters)



>mm_chr3_117848106_117849103
          Length = 998

 Score = 1023 bits (529), Expect = 0.0
 Identities = 579/597 (96%), Gaps = 5/597 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattagggaacaa-aaagccttacaacacgggctcagaacaggaagccatgtgcc 63
           ||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattcattagggaagaacaaagccttacaacacaggctcagaacaggaagccatgtgcc 264

                                                                       
Query: 64  tatctcag-aaaaaagtgagcacatgaaaaagaaaattcttgtttagcagtggcatatcc 122
           |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 tatctcagaaaaaaagtgagcacatgaaagagaaaattcttgtttagcagtggcatatcc 324

                                                                       
Query: 123 caggggaaaaataacataaaaagagtcaatagaactctattctctttctatttttgactt 182
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 caggggaaaaataacataaaaagagtcaatagaactctattctctttccatttttgactt 384

                                                                       
Query: 183 catctactctttgtgcttatgtgtagatagtggaatcctaacttactaaaccattaaaaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 catctactctttgtgcttatgtgtagatagtggaatcctaacttactaaaccatttaaaa 444

                                                                       
Query: 243 ccttcccttgcaaatattacatttcttactgtttggtttcaggtttaagagccatattag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 445 ccttcccttgcaaatattacatttcttactgtttggtttcaggtttaagagccatcttag 504

                                                                       
Query: 303 aaaccaatgatggagctactcgaagaagagatcagtttagtgctcagtgcctttggagca 362
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaccaatgatggagctactcaaagaagagatcagtttagtgctcagtgcctttggagca 564

                                                                       
Query: 363 aaggggcacaggtggtcccaaattctggagcatatgctgaaggaaagggagaagccagca 422
           ||||||||   ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 565 aaggggca---gtggtcccaaattctggagcatacgctgaaggaaagggagaagccagca 621

                                                                       
Query: 423 atattatctctctttgactctgagactttgcatcttggtgggagggaaacatcagatgga 482
           |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 622 atattatctctctttgactctgagaccttgcatcttggcgggagggaaacatcagatgga 681

                                                                       
Query: 483 tctctccaagaggaaccaccaacacccccaaacaagagcacagttgtaaaagcactgtgc 542
           ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 682 tctctccaagaggaaccactaacacccccaaacaagagcacagttgtcaaagcactgtgc 741

                                                                    
Query: 543 tctaagtgttgagatgagtcttacaagcaaggtgaaagataaagttctcacagaaac 599
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tctaagggttgagatgagtcttacaagcaaggtgaaagataaagttctcacagaaac 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 998
Length adjustment: 10
Effective length of query: 589
Effective length of database: 988
Effective search space:   581932
Effective search space used:   581932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)