Query= MSMg01no114_b23.b1 MSMg01no114_b23.b1 CHROMAT_FILE:
MSMg01no114_b23.b1 PHD_FILE: MSMg01no114_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:44 2005
(380 letters)
>mm_chr3_147597267_147598051
Length = 785
Score = 569 bits (294), Expect = e-166
Identities = 358/380 (94%), Gaps = 7/380 (1%)
Strand = Plus / Plus
Query: 5 gaattctttagacagtgaaagggtcagcagtgtctttacaacataaatgactagaagata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttagacagtgaaagggtcagcagtgtctttacaacataaatgactagaagata 264
Query: 65 gctctctagaagcttaacttacagttatttgactccttcatttctattggtataaaattt 124
||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||
Sbjct: 265 gctctctagaagcttaacttacagttacttgactccttcatttctagtggtttaaaattt 324
Query: 125 aaaaacttaaaaaacaaagttcaaca--aaagta-ttttttatcttcagcagataggaca 181
|||||||||||||||||||| |||| |||||| |||||||||| ||||||||||||||
Sbjct: 325 taaaacttaaaaaacaaagttaaacaagaaagtatttttttatctgcagcagataggaca 384
Query: 182 gaaaggagttgaggtgaatattttgtttcctaaatatgatttatctagaactctctgtac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaaggagttgaggtgaatattttgtttcctaaatatgatttatctagaactctctgtac 444
Query: 242 agagcctggaaatattgacttattattaatatttttgatgcctgtgtcctgctattctat 301
|| | |||||||||||||||||||||||||||||| | ||||||||| |||||| |||||
Sbjct: 445 agggtctggaaatattgacttattattaatattttcggtgcctgtgttctgctactctat 504
Query: 302 acttgcccaggctaagaggagatgtagaaagccattgtctaaggttgcttcttttttgtt 361
||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct: 505 gcttgcccaggctaagaggagatgtagaaagccattgtctaaggttgctt-ttttctatt 563
Query: 362 tg-tttggtt-ggtt-ggtt 378
|| ||||||| |||| ||||
Sbjct: 564 tggtttggtttggtttggtt 583
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 785
Length adjustment: 9
Effective length of query: 371
Effective length of database: 776
Effective search space: 287896
Effective search space used: 287896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no114_b23.g1 MSMg01no114_b23.g1 CHROMAT_FILE:
MSMg01no114_b23.g1 PHD_FILE: MSMg01no114_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:44 2005
(544 letters)
>mm_chr3_147747067_147747998
Length = 932
Score = 803 bits (415), Expect = 0.0
Identities = 509/547 (93%), Gaps = 18/547 (3%)
Strand = Plus / Minus
Query: 1 agattatttttccagattagcaaaaatatcaagctcacagctcaaaagaagtccccaaac 60
|||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 732 agattatttttctagattagcaaaaatatcaagctcacagctcaaaa-aagttcccaaac 674
Query: 61 cataaagcataaggacaggggatttatattaaagcatattaaaactaaatgtataatgtt 120
| ||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cgtaaagcacaatgacaggggatttatattaaagcatattaaaactaaatgtata----- 619
Query: 121 ataacttgtcaaaaattatgttatgctatagcatgagaaatattaattctaaaaatagac 180
||||| |||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct: 618 ataacatgtcaaaaatta---tat--tatagcataagaaatattaattctaaaaatagac 564
Query: 181 atacaaaaagttttagttatagagaaataagaattacaaaaagtgtgttgt-tgaactaa 239
|||||||||||||||||| ||||||||||||||||||| |||||||||||| |||| |||
Sbjct: 563 atacaaaaagttttagttttagagaaataagaattacagaaagtgtgttgtctgaattaa 504
Query: 240 ttcaagtgtggagatgatgaaaaatatcctctagtaactgaattgaaacaaaagaaaaga 299
|||||||||||| |||||||||| |||||||||||||||||||||||| ||||| |
Sbjct: 503 ttcaagtgtggatttgatgaaaaacatcctctagtaactgaattgaaactaaaga----a 448
Query: 300 aaacaaacaaacaaaaaactcaccaaac-tccgtcttaaaactctccaaaata-tttttt 357
||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 447 aaacaaaaaaacaaaaaactcaccaaacttccgtcttaaaactctccaaaatattttttt 388
Query: 358 ttcaaaatttaaagcataaaggtcttcagacaaaaattttgaaagaattcactgcctgct 417
||||||| |||||||||||||||||||||||||||| |||||||||||||| ||| ||||
Sbjct: 387 ttcaaaacttaaagcataaaggtcttcagacaaaaaatttgaaagaattcagtgcttgct 328
Query: 418 tctctgtaacccttagttaatattcttgctgtcagctccatgtttcttgcccaaatagga 477
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 327 tctctgtaacccttagttaatattcttgctgtcagctccatgtctcttgcccaaatagga 268
Query: 478 gtttttctattaagcttgctaatcttatagatcatttccaaaatgtgacatgacctactt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gtttttctattaagcttgctaatcttatagatcatttccaaaatgtgacatgacctactt 208
Query: 538 taaaaca 544
|||||||
Sbjct: 207 taaaaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 932
Length adjustment: 10
Effective length of query: 534
Effective length of database: 922
Effective search space: 492348
Effective search space used: 492348
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
