Query= MSMg01no114_c22.b1 MSMg01no114_c22.b1 CHROMAT_FILE:
MSMg01no114_c22.b1 PHD_FILE: MSMg01no114_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:49 2005
(566 letters)
>mm_chr3_60382802_60383767
Length = 966
Score = 1071 bits (554), Expect = 0.0
Identities = 560/562 (99%)
Strand = Plus / Minus
Query: 5 gaattcctcagaattttcaaaatgtgctctactatgagcctatgaggtgggggtgggaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 gaattcctcagaattttcaaaatgtgctctactatgagcctatgaggtgggggtgggaag 707
Query: 65 ggacagacattcagctcgcctcgtgcaactgtgtgctatttctcattgcttccaattacg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ggacagacattcagctcgcctcgtgcaactgtgtgctatttctcattgcttccaattacg 647
Query: 125 atgccaacacctcattggtcaatttgcttttctggctctcacatatactctgtaacgccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 atgccaacacctcattggtcaatttgcttttctggctctcacatatactctgtaacgccc 587
Query: 185 tgaagtgtgtaagggtgttttcttggagactgtcatggtgctcatgcctggcccatgctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tgaagtgtgtaagggtgttttcttggagactgtcatggtgctcatgcctggcccatgctt 527
Query: 245 aacagtatgctataaaagcaaaacaatatcgacaagagctaaaggcagcgaataagtgag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aacagtatgctataaaagcaaaacaatatcgacaagagctaaaggcagcgaataagtgag 467
Query: 305 tccttcaaggtggtcagctctcctagacttctggagctagacgaaaagttatgatccctt 364
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 466 tccttcaaggtggtcagctctcctagacttctggagctagatgaaaagttatgatccctt 407
Query: 365 gatgatagtctaaggtccaaagaagcaagtgttctaatgcaaatgacaaggtcaaaggga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gatgatagtctaaggtccaaagaagcaagtgttctaatgcaaatgacaaggtcaaaggga 347
Query: 425 ggaatgctcattggtatgagaagttggaaaaaagaaatggaaatgtaggagaaaggcagg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ggaatgctcattggtatgagaagttggaaaaaagaaatggaaatgtaggagaaaggcagg 287
Query: 485 aattcaacagtagctttgaatactgaacaaatctgaaacagtaacccagcacacacttcc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aattcaacagtagctttgaatactgaacaaatctgaaacagtaacccagcacacacttcc 227
Query: 545 atgaagacattatttttcaaac 566
||||||||||||||||| ||||
Sbjct: 226 atgaagacattattttttaaac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no114_c22.g1 MSMg01no114_c22.g1 CHROMAT_FILE:
MSMg01no114_c22.g1 PHD_FILE: MSMg01no114_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:49 2005
(503 letters)
>mm_chr3_60271457_60272359
Length = 903
Score = 888 bits (459), Expect = 0.0
Identities = 488/503 (97%), Gaps = 10/503 (1%)
Strand = Plus / Plus
Query: 1 catatataaattcattctaattatgttttgcagggattggggactcaattggtaaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 catatataaattcattctaattatgttttgcagggattggggactcaattggtaaagtgc 270
Query: 61 ttaccctgcaaactggcaagactcaacacccagagataaaatcccatgtacaaggagatg 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ttatcctgcaaactggcaagactcaacacccagagataaaatcccatgtacaaggagatg 330
Query: 121 aatggacctgtaatcctagcactggggaccaaggtcactgaagcttccaggccatctact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aatggacctgtaatcctagcactggggaccaaggtcactgaagcttccaggccatctact 390
Query: 181 ctagcttaatcagttagctttaggttcagtgagagaccttgtcccaaaaggtaaggtaga 240
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 391 ctagcttaatcagttagctttaggttcagtgagagaccttgtc--aaaaggtaaggtaga 448
Query: 241 aaggtattgagtaaatcatacattgttaaccaatatgtaaccatttatgtatatctatac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aaggtattgagtaaatcatacattgttaaccaatatgtaaccatttatgtatatctatac 508
Query: 301 aaaaatgtccacatatgaacatacacactcacacacacacacacatcttagaaatatctt 360
||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 509 aaaaatgtccacatatgaaca--------cacacacacacacacatcttagaaatatctt 560
Query: 361 catattattgtttaaagtgcaaaagcatgcagtgatgttttaagttactttaaataatct 420
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catattatggtgtaaagtgcaaaagcatgcagtgatgttttaagttactttaaataatct 620
Query: 421 cacaaaacaatttaatttgttatataatatgagtttatagataaaatttgataggaaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 cacaaaacaatttaatttgttatataatatgagtttatagataaaatttgataagaaatg 680
Query: 481 aataacagggatccaatatacac 503
||||||||||||| |||||||||
Sbjct: 681 aataacagggatcaaatatacac 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
