BAC Information

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BAC

Clone NameMSMg01-114D22
Chromosome3 (Build37)
Map Location 106,346,617 - 106,347,171
singlet/doubletsinglet
Overlap geneCept1
Upstream geneKcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d
Downstream geneTmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114D22.T7 (MSMg01no114_d22.b1)MSMg01-114D22.TJ (MSMg01no114_d22.g1)
ACCAG326174AG326175
length716755
length of high quality
(start - end)
557 (40 - 596)620 (74 - 693)
definitionCHROMAT_FILE: MSMg01no114_d22.b1 PHD_FILE: MSMg01no114_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:53 2005CHROMAT_FILE: MSMg01no114_d22.g1 PHD_FILE: MSMg01no114_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TCTTGAAAGAGAATAAAAGTTGAGCTGGTTCCATTTTTATTGTGTTGGCT
CAGTCTGTTCCATCCTCACATTGTTTGTTATTTTGTTAAAGGCAGTACAC
AGAGGGCACTAGCCTATTTTAGCTGATAGCTACAAGCAGCTGATCCTAAT
GGTTTTAAGTTTAAGTATTTGGCAGGAAGAGCTGACAAACTGATACTTTC
CTTTTAAGATTTTCCCCTCATGACCTAATTTCTCTTAACCTTTTATGGGT
TCATTAGAAAAATACATTGTTGAGAATTTGTTTCTGACCTAGCCATTATG
TCAACCATACATTTTTAAAAGGTAATGAGTTTTTTGAACATTTCAATCTA
GCAACTTTGTCTCTCTGTACAGCTTCCAGTAACAGCACTGTAAATGTGAA
TTCAGGCGCAAGTATCCCAGACACACTGATGACTGCTTTACTTTCAACCC
ATGCCAACAGTCAGAAGTTGCTGACACTGTTCCAGGTCATCTCCACCTTT
CCTTCTTCAACCCCATGGGAGAGCACCCAGTGCTAATGGGAAAACAACTA
CAGACCATGGGTATCTGAATTTTACCAAAGGAAAGCTAACGTACACCAAA
GGAGCAGCAAATGGGAGCTTAGAAGAGGAAGAATAAAGAGTGTGAGAATG
GAAGTTTGGAAGACTT
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGGTCTTACCATGTTCCCCATCATC
CTGATGCAGCTGGTCTAATAGAAAGTTAGAATGGCCTTTTGAAGACGCAG
TTACAGCGCCAATTAGGTGGTAATAGCATGAAAGGCTGGGGCAGAGTTCT
TCAGAAGGCAGTATATGCTTTGAATCAGCACTCGATATATGGTACAGTTT
CACCCATAGCCAGGATCCATGGGTCCAGGAATCAAGTGGTGGAAAAGGAA
ATAGTTCCACTCACTATCACTCCTAGTGACCCTCTAGGAAAATTTTTGCT
TCCTGTCCCCATAATTCTAGGTTCTGCAGGCCTAGAAGTTTTGGCTCCAG
AGGTGGGAGTGCTCCTACCAGGAGCTACAACAAACATTCCATTGAACTGG
AAGCTCAGACTTCCCCCTGATCATTTTGGGCTTCTAATGCCCTTAAACCA
ACAGGCTAAAGAGGAATAACAGTGTTAGGAAGGGTGATAGATCCAGATTA
CCATGGGGAAATTGGATTACCTCTTCACAATGGATTATGTCTGGAATGTA
GGAGATCCCTTAGAGCATCTCTTAGTACTACCATGTCCTGTGATTAAAGT
CAACGGGAAACTACAACAGCCTAATCCAAGCAGGATGACAAAGGACACAA
ACCCATCAGGAATGAAGGTGTGGGTCAATCCTCCAGGAAAAGAGCCAAGA
CCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_d22.b1 MSMg01no114_d22.b1 CHROMAT_FILE:
MSMg01no114_d22.b1 PHD_FILE: MSMg01no114_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:53 2005
         (557 letters)



>mm_chr3_106346414_106347371
          Length = 958

 Score = 1042 bits (539), Expect = 0.0
 Identities = 551/555 (99%), Gaps = 1/555 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctcttgaaagagaa-taaaagttgagctggttccatttttattgtgttggctc 62
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctcttgaaagagaaataaaagttgagctggttccatttttattgtgttggctc 263

                                                                       
Query: 63  agtctgttccatcctcacattgtttgttattttgttaaaggcagtacacagagggcacta 122
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatctgttccatcctcacattgtttgttattttgttaaaggcagtacacagagggcacta 323

                                                                       
Query: 123 gcctattttagctgatagctacaagcagctgatcctaatggttttaagtttaagtatttg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcctattttagctgatagctacaagcagctgatcctaatggttttaagtttaagtatttg 383

                                                                       
Query: 183 gcaggaagagctgacaaactgatactttccttttaagattttcccctcatgacctaattt 242
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcaggacgagctgacaaactgatactttccttttaagattttcccctcatgacctaattt 443

                                                                       
Query: 243 ctcttaaccttttatgggttcattagaaaaatacattgttgagaatttgtttctgaccta 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctcttaaccttttatgggttcattagaaaaatacattgttgagaatttgtttctgaccta 503

                                                                       
Query: 303 gccattatgtcaaccatacatttttaaaaggtaatgagttttttgaacatttcaatctag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gccattatgtcaaccatacatttttaaaaggtaatgagttttttgaacatttcaatctag 563

                                                                       
Query: 363 caactttgtctctctgtacagcttccagtaacagcactgtaaatgtgaattcaggcgcaa 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caactttgtctctctgtacagcttccagtaacagcactgtaaatgtgaattcaggcgcaa 623

                                                                       
Query: 423 gtatcccagacacactgatgactgctttactttcaacccatgccaacagtcagaagttgc 482
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 624 gtatcccagacacactgatgactgctttactttcaacctatgccaacagtcagaagttgc 683

                                                                       
Query: 483 tgacactgttccaggtcatctccacctttccttcttcaaccccatgggagagcacccagt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgacactgttccaggtcatctccacctttccttcttcaaccccatgggagagcacccagt 743

                          
Query: 543 gctaatgggaaaaca 557
           |||||||||||||||
Sbjct: 744 gctaatgggaaaaca 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 958
Length adjustment: 10
Effective length of query: 547
Effective length of database: 948
Effective search space:   518556
Effective search space used:   518556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)