BAC Information

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BAC

Clone NameMSMg01-114E11
Chromosome3 (Build37)
Map Location 62,874,222 - 62,874,590
singlet/doubletsinglet
Overlap genenone
Upstream gene4631416L12Rik, Dhx36, Gpr149, LOC676984
Downstream geneLOC666967, Mme, Plch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114E11.T7 (MSMg01no114_e11.b1)MSMg01-114E11.TJ (MSMg01no114_e11.g1)
ACCAG326199AG326200
length704732
length of high quality
(start - end)
411 (45 - 455)369 (75 - 443)
definitionCHROMAT_FILE: MSMg01no114_e11.b1 PHD_FILE: MSMg01no114_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:56 2005CHROMAT_FILE: MSMg01no114_e11.g1 PHD_FILE: MSMg01no114_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTCGCTCTGAGCCCTATTATATATATATATATATTTTTTTA
TTAGGTATTATCATTATTTACATTTCTAATGCTATCCCAAAAGTCCCCCA
TACCCTCCCCCCTCTCCCATACCTACACACTCCCACCTTTTGGCACTGGC
ATGCCTCTGTACTGGGGCATATAAAGTTTTCAACTCCAATGGGCATCTCT
TTCCAGTGATGGCCAACTAGGCCATCTTTTGATACATATGCAGCTAGAGT
CAAGAGCTCCGGGGTACTGGTTAGTTCATATTGTTGCTCCACCTATAGGG
TTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGG
GGCCCTGTGATCCATCCAATAACTGACTGTGAGCATCCACTTCTGTGTTT
GCTAAACCTCTGCATAATCTCACAAGAAAGAGCTATATCTGGAAACTTTC
AGCAAAATCTTGCTAGTGTGTGCAATGATGTCGGGATTTGGAAGCTGATT
ACGGGATGGGTCGACAAATATGGCAGTCTCTAAAAGAAACATCCCTTCAT
CTCAATTCCAAACTTTGTCTCAGAAACTCCTTCCATGGGTGATTTGTTCC
CAATACAAAGACGGGGCAAAGTGAACAAACTTTAAAAACTAGACAAAAAG
AAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTATGCATTGCCTTGAAATCTGTGAT
TGTTATTCTTTTCTAGATCCCTGAAGGCTCTGCAACTTAAATAAAAGTCA
CACATGCTATTTACATTATAAAAACCACAGGCAGGCAACCCATTTGGATG
GTTCACAGATTCTATATAATGTGCTACATTCAACCTTTCCCCACCTCCTA
TACTACCACCTGCCTAGAAAATTAACGAAATTAAACTAATTTTGTTGTTC
TTTTAATTAGGATGAAGAATTCATTCTTCCTCTGCCACACACTTCACATA
TTTGCTAGATGTATTACTACATATTTGAAAGCATGGCCCTCACTTACTAC
TGTCTTTTTAATATACATATATATCTCTATATCTCTATATATCTTAGTAT
AACGTATATCAGTATAAGGCTTTTATATATATATGTGTATATATATACAT
ATACACATATATTCACACCCACACACACACATATACCATATATATCCTAT
CACAAGGTGCTAGTATAAGGTTTTATATATATATATACCTATATATATGC
ATACATACATACATACTATATATATCCCCATACATACATATACCCCCCTC
TATACCTCCCTTTCTTTTCCCCCTTTACCCTCTTCCCCCCCCCCCCTTGT
CTCCCCGCTCTCCCTATACCCCCATCCTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_e11.g1 MSMg01no114_e11.g1 CHROMAT_FILE:
MSMg01no114_e11.g1 PHD_FILE: MSMg01no114_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:56 2005
         (369 letters)



>mm_chr3_62874022_62874790
          Length = 769

 Score =  667 bits (345), Expect = 0.0
 Identities = 363/369 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatgcattgccttgaaatctgtgattgttattcttttctagatccctgaaggctctgca 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 569 ttatgcattgccttgaaatctgtgattgttatttttttctagatccctgaaggctctgca 510

                                                                       
Query: 61  acttaaataaaagtcacacatgctatttacattataaaaaccacaggcaggcaacccatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 acttaaataaaagtcacacatgctatttacattataaaaaccacaggcaggcaacccatt 450

                                                                       
Query: 121 tggatggttcacagattctatataatgtgctacattcaacctttccccacctcctatact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tggatggttcacagattctatataatgtgctacattcaacctttccccacctcctatact 390

                                                                       
Query: 181 accacctgcctagaaaattaacgaaattaaactaattttgttgttcttttaattaggatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 accacctgcctagaaaattaacgaaattaaactaattttgttgttcttttaattaggatg 330

                                                                       
Query: 241 aagaattcattcttcctctgccacacacttcacatatttgctagatgtattactacatat 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 329 aagaattcattcttcctctgccacacacttcacatatttgctagatatattactagatat 270

                                                                       
Query: 301 ttgaaagcatggccctcacttactactgtctttttaatatacatatatatctctatatct 360
           ||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttgaaagcatggttctcagttactactgtctttttaatatacatatatatctctatatct 210

                    
Query: 361 ctatatatc 369
           |||||||||
Sbjct: 209 ctatatatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)