Query= MSMg01no114_f05.b1 MSMg01no114_f05.b1 CHROMAT_FILE:
MSMg01no114_f05.b1 PHD_FILE: MSMg01no114_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:59 2005
(350 letters)
>mm_chr3_135142012_135142761
Length = 750
Score = 561 bits (290), Expect = e-164
Identities = 332/348 (95%), Gaps = 6/348 (1%)
Strand = Plus / Plus
Query: 4 ggaattcaacccatgcccgtcctctggaa-aaacagtccaggcccttaactgctgagtca 62
|||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 208 ggaattcaacccatgcgtgtcctctggaagaaa-agtccaggcccttaactgctgagtca 266
Query: 63 tctctctgagtttttttttttttttttttttttgggttttcaagacagggtttttctgtg 122
||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 267 tctctctga----ttttttttttttttttttttggtttttcaagacagggtttctctgtg 322
Query: 123 tagccctggctgtcctggaactcactttgtagaccaggctgacctcgaactcagaaatct 182
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 323 tagccctggctgtcctggaactcactttgtagaccaggctggcctcgaactcagaagtcc 382
Query: 183 acctgcctctgcctcccgagtgctgggattaactctcactgctttttgatgtaaggagtc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acctgcctctgcctcccgagtgctgggattaactctcactgctttttgatgtaaggagtc 442
Query: 243 cctggctccagctcctgctgctgtggaccgtgttgtcccttttccacagtcagctgtacc 302
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 443 cctggctccagctcctgctgctgtggaccgtgctgtcccttttccacagtcagctgtacc 502
Query: 303 ctcttaaacttgggagcttccagttgttccttggcagatgtctggcca 350
|||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 503 ctcttaaacttgggagcttcaagttgttccttgtcagatgtctggcca 550
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space: 252681
Effective search space used: 252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no114_f05.g1 MSMg01no114_f05.g1 CHROMAT_FILE:
MSMg01no114_f05.g1 PHD_FILE: MSMg01no114_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:59 2005
(452 letters)
>mm_chr3_135233094_135233941
Length = 848
Score = 754 bits (390), Expect = 0.0
Identities = 435/452 (96%), Gaps = 4/452 (0%)
Strand = Plus / Minus
Query: 1 ctggtgctatgaaaggcctacattacttcagaacctccacatttggttccacacacacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 648 ctggtgctatgaaaggcctacattacttcagaacctccacatttggttc----cacacaa 593
Query: 61 tcatgtcacagtctagtggtctcccaaaaaggtcatcgggtggtatgagtcttctggccg 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 592 tcatgtcacagtctagtggtctcccaaaaaggtcattgggtggtatgagtcttctggccg 533
Query: 121 tgctttagctgtggaacaaaaccacaatcctgggagattcaagaatccccgggcatgacc 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tgctttagctgtgggacaaaaccacaatcctgggagattcaagaatccccgggcatgacc 473
Query: 181 ttgtctaaggacatcaccaggatgaacggtattcactgggaagtcatagtgccccaggca 240
|||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 472 ttgtctaaagacatcaccaggatgaacagtattcactgggaagtcatagcaccccaggca 413
Query: 241 gcagatacttctcgaaggttttatctcaggctgccttcttctccagccatgctttacaaa 300
|||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 412 gcagatacttcttgacggttttatctcaggctgccttcttctccagccatgctttagaaa 353
Query: 301 ggctttgtccccagtgtccactgaattacaagccatgtcccttcagtaggtatctgtcag 360
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 352 gcctttgtccccagtgtccactgaattacaagccatgtcccttcagtaggtatccgtcag 293
Query: 361 ggaggtgacgctgaaggcctgctgcagctcactcttgctggtgggcttccaagggcaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 292 ggaggtgacgctgaaggcctgctgcagctcactcttgctggtgggcttccaagggtaaaa 233
Query: 421 cagtaccgagagtttcttctgaatcatgagga 452
||||||||||||||||||| ||||||||||||
Sbjct: 232 cagtaccgagagtttcttccgaatcatgagga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 848
Length adjustment: 10
Effective length of query: 442
Effective length of database: 838
Effective search space: 370396
Effective search space used: 370396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
