BAC Information

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BAC

Clone NameMSMg01-114F21
Chromosome3 (Build37)
Map Location 61,998,627 - 61,998,821
singlet/doubletsinglet
Overlap genenone
Upstream geneRap2b, LOC666891, LOC669910, LOC676965
Downstream gene4631416L12Rik, Dhx36, Gpr149, LOC676984, LOC666967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114F21.T7 (MSMg01no114_f21.b1)MSMg01-114F21.TJ (MSMg01no114_f21.g1)
ACCAG326265AG326266
length717747
length of high quality
(start - end)
195 (122 - 316)665 (74 - 738)
definitionCHROMAT_FILE: MSMg01no114_f21.b1 PHD_FILE: MSMg01no114_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:02 2005CHROMAT_FILE: MSMg01no114_f21.g1 PHD_FILE: MSMg01no114_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAACACCATCCGCGGAATTC
TGCCCAGTTTCACAAACATTGAACCTGTTAAGCATGCTTGCCAAGTTTTA
GACTTTTTAGGGCTTATTTTAGAAAGAAAAAAAAAGAGTTGCTTTTTAGA
TGTATCAAAAGGATGAATTTGTGAAGAAAATTTATAGTGTGAGATCCAAG
AAGTAATTTTAGAGACCCAAAGATGGCAGTCAGACAAATGCTCTCAATTT
CTTAGTTATACTGAGGCTAGGAGGAAGAGATGTCTTCTCCCAAATTTCTC
TACATCTTACTTTGTATTGTTTTTTATGGTCACAATATCCTAGAAGCTCT
AGGAATCATGTTTGCTATTTACCGACATAATGAAGGAAACAAGGCTACCA
TGATCCTTATCTAATGGCATGTATAATCAGTATACAGCAGTATTATACAG
CAATTTGGCATAAATGGTAAATGATAATTTAGATGACTGGAATTAGCATT
ACTTTTACAAACTGCATCTCTAGGGTCAGTGAAAGAGAATAATAACAATA
CCCGCTAAAAAAAGAAAAGATGCTTCAATATTTATCTAGAAGGGAAAAAA
ACTAGCAGCTGGCCTCCCCCGTTATCCAGGGATGTTTTAGTACTGTGGAG
TCTTATATTAACCTACTATCAGGTTTGGTGGCTTATATCTGAAACCCTAA
GTCATGGAAGAAGAAAG
CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXGCTTGGAAAATTGTTTTCCAGCCTTTC
ACTCTGAGGTAGTGTCTGTCTTTTCCCCTGAGGTGGGTTTCCTGTAAGCA
GCAAAATGTTGGGTCCTGTTTGTGTAGCCAGTCTATTAGTCTATGTCTTT
TTATTGGGAATTGAGTCCATTGATGTTAAGAGAAATTAAAGAAAAGTAAT
TTTTGCTTCCTGGTTTTTGTTGTTGTTGTTGTTAAAGTTGGGATTCTGTT
CTTACAGTTGTCTTCTTTAAGGTTTGTTGAAGGATTACTTTCTTGCATTT
TCTAGGGTGTAGTTTCCATCCTTATGTTGGTGTTTTCCCTTTATTATTCT
TTAAAGGCTGGATTCGTGGAAAGATATTGTGTGAATTTGGTTTTGTCATG
GAATACCTTGTTTTCTACATCTATGGTAACTGAGAGTTTTGCTGGGTATA
GTATCCTGGGCTGGCATTTGTGTTCTCTTAGGGTCTGCATAACATCTGTC
CAGGATCTTCTGGCCTTCATAGTCTCTGCTGAGAAGTCTGGTGTAATTCT
AATAGGCCTGCCTTTATATGTTACTTGACATTTTCCCCTTACTGCTTTTA
ATATTCTATCTTTATTTAGTACATTTGTTGTTCTGATTATTATGTGTTGG
GAGGAATTTCTGTTCTGGTCCAGTCTATTTGGAGTTCTGTAGGCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_f21.b1 MSMg01no114_f21.b1 CHROMAT_FILE:
MSMg01no114_f21.b1 PHD_FILE: MSMg01no114_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:02 2005
         (195 letters)



>mm_chr3_61998427_61999021
          Length = 595

 Score =  354 bits (183), Expect = e-102
 Identities = 192/195 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaagaaaaaaaaagagttgctttttagatgtatcaaaaggatgaatttgtgaagaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaagaaaaaaaaagagttgctttttagatgtatcaaaaggatgaatttgtgaagaaaat 260

                                                                       
Query: 61  ttatagtgtgagatccaagaagtaattttagagacccaaagatggcagtcagacaaatgc 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ttatagtgtgagatccaagaagtaattttagagacccgaagatggcagtcagacaaatgc 320

                                                                       
Query: 121 tctcaatttcttagttatactgaggctaggaggaagagatgtcttctcccaaatttctct 180
           |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcaatttcatagttaaactgaggctaggaggaagagatgtcttctcccaaatttctct 380

                          
Query: 181 acatcttactttgta 195
           |||||||||||||||
Sbjct: 381 acatcttactttgta 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)