Query= MSMg01no114_m05.b1 MSMg01no114_m05.b1 CHROMAT_FILE:
MSMg01no114_m05.b1 PHD_FILE: MSMg01no114_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:32 2005
(535 letters)
>mm_chr3_80458722_80459656
Length = 935
Score = 967 bits (500), Expect = 0.0
Identities = 521/528 (98%), Gaps = 1/528 (0%)
Strand = Plus / Plus
Query: 8 attcagtgcttttcgcactaggctctaacagaagggatttatcttcttctacctttccac 67
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 209 attcagtgctttt-gcactaggctctaaccgaagggatttatcttcttctacctttccac 267
Query: 68 atcctgccttatgaggatgcagctttcatgggaacatcttgcaaacagataccagattgc 127
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atcctgccttatgaggatgcggctttcatgggaacatcttgcaaacagataccagattgc 327
Query: 128 agtgatagataccatccccattatcctctctagtctgccatgcaaaactgtaagaaaagt 187
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 328 agtgatagataccatccccattatcctctctagtctgccatacaaaactgtaagaaaagt 387
Query: 188 gcatgtctattctttataaattactcagttcaggcattttattatgaaagcataaagaga 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gcatgtctattctttataaattactcagttcaggcattttattatgaaagcataaagaga 447
Query: 248 tagggaatttagtaaagtgcctaaagaatactttttgagacttttagttctgtttctctg 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tagggaatttagtaaagtgcctaaagaatactttttgagacttttagttctgtttctctg 507
Query: 308 tgaaatattttctttatattactgcaataaacagtgtttaaatcttgaggcaataatcag 367
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 508 tgaaatattttctttatattactgtaataaacagtgtttaaatcttgaggcaataatcag 567
Query: 368 gtctagataacagatttatacgatgaagacttggttctcagtatagctctggaaagtggt 427
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gtctagataaaagatttatacgatgaagacttggttctcagtatagctctggaaagtggt 627
Query: 428 gggacctgtaaatagtagagcttattagaaggaagttaaaaagtctaagtgtgtcttcca 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gggacctgtaaatagtagagcttattagaaggaagttaaaaagtctaagtgtgtcttcca 687
Query: 488 aggagagtatgggactttagatatgtctgtctcatttgttccaggctt 535
||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 688 aggagagtatgggactttagatatgtctgcctcatttgttccaggctt 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no114_m05.g1 MSMg01no114_m05.g1 CHROMAT_FILE:
MSMg01no114_m05.g1 PHD_FILE: MSMg01no114_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:32 2005
(327 letters)
>mm_chr3_80619737_80620464
Length = 728
Score = 572 bits (296), Expect = e-168
Identities = 320/328 (97%), Gaps = 1/328 (0%)
Strand = Plus / Minus
Query: 1 acaaaatatttataaatcttaaagttgttagaaggaaggtacaatttggggtatatttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 acaaaatatttataaatcttaaagttgttagaaggaaggtacaatttggggtatatttgg 469
Query: 61 accccaagttaccttgtgacttgagaatctctgagtttgtgcacatagtagcaaatgatg 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 468 accccaagttaccttgtgacttgagaatctctgagtttgtgtacatagtagcaaatgatg 409
Query: 121 ctgttccaagtgattcactgtgtccagacatttgaaggcacagcctggaaatgatagaat 180
|||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||
Sbjct: 408 ctgttccaagtgattcactgtgtccagacaattgagggcacagtctggaaatgatagaat 349
Query: 181 attgcattcacagcagagtattctaagattagaga-ttttttctatacaatgttatatga 239
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 348 attggattcacagcagagtattctaagattagagatttttttctatacaatgttatatga 289
Query: 240 cttctccattattactcttagtattatttatctacctacgtgaatgtaaaccatgtcttt 299
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 288 cttctccattattactcttagtattatttatctacctacgtgaatgtaaatcatgtcttt 229
Query: 300 cttcccagtattcctttctcaatctctc 327
|||| |||||||||||||||||||||||
Sbjct: 228 cttctcagtattcctttctcaatctctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 728
Length adjustment: 9
Effective length of query: 318
Effective length of database: 719
Effective search space: 228642
Effective search space used: 228642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
