BAC Information

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BAC

Clone NameMSMg01-115B12
Chromosome3 (Build37)
Map Location 5,344,106 - 5,344,301
singlet/doubletsinglet
Overlap geneZfhx4
Upstream geneLOC620283
Downstream genePxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570, LOC100041214
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115B12.T7 (MSMg01no115_b12.b1)MSMg01-115B12.TJ (MSMg01no115_b12.g1)
ACCAG326815AG326816
length727713
length of high quality
(start - end)
198 (68 - 265)248 (80 - 327)
definitionCHROMAT_FILE: MSMg01no115_b12.b1 PHD_FILE: MSMg01no115_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:57 2005CHROMAT_FILE: MSMg01no115_b12.g1 PHD_FILE: MSMg01no115_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACC
AAAGCATCCTTTCATGAATGCTGGTGGTGGTGTCTCTTCTCAGCTGATAA
AAGCATGAGGAACCTCCTATGATACTAGACTGTGAAACAAACCTGCCTGT
ACAACAAGATCCACTTTAGAACTTTCAGCTGACAAAGTGAAAACTCACTT
ACTTCTAGCACTTCAGAAAATGGTGGCCTTGGAACAGCATCAGCTCAACA
TTTCCAACTTGGACGTCATTACAATTAATACATGTATTTAGATTGGGGGT
CTTGCTATGCCAAATACAGTTCCAAGCACACATTTATAGCAGAATCAGAA
AGCTGTGAAATGTTGCCCCCCTACTAGCAAGAGTGGCATACTGTCATAGG
AAACAGGCCCACCAAAACACTTAAAATGCTATTTGGGTTCATGACCAAGA
AGAGAAGGGCCCAGTGTGCATTGAGTCAGGCTTTCCTGTTCAAGAGAATC
AATTTGAAGCGGAGTGCATTAACTACCTCCACAATGACATCCAGGGCAGC
TTTCCCAATCACAATAACCCTACGCATTCCTACGTGCACCTTATTGCCCT
CCCCTTTCAGCGCCCTATTGAATTCGCCATAATAATTTTCTCTACTACCC
CAAGTAGTTGCCGGGCTTAAACTCGCAAGTGCTATAAACGAAGGACACAG
TATACCAAAGGGCAAAGACGAACCCCN
CGTCCTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAGATCAGTCTGGCGGTTCCTCAGAATATTTTATATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGT
AAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGA
AGATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACACATTCACAATGGAACTCACCCAATATGTACTCACTGA
TAAGTGGATATTAGCCCATAACCTAAGATACCCCAGATATAAGATACCAT
TTTCCTAAACCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_b12.b1 MSMg01no115_b12.b1 CHROMAT_FILE:
MSMg01no115_b12.b1 PHD_FILE: MSMg01no115_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:57 2005
         (198 letters)



>mm_chr3_5343906_5344503
          Length = 598

 Score =  358 bits (185), Expect = e-103
 Identities = 194/197 (98%), Gaps = 2/197 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgctggtggtggtgtctcttctcagctgataaaagcatgaggaacctcctatgatact- 59
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 396 atgctggtggtggtgtctcttctcagctgataaaagcatgaggaacctcctatgatacta 337

                                                                       
Query: 60  agactgtgaaacaaacctgcctgtacaacaagatccactttagaactttcagctgacaaa 119
           || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ag-ctgtgaaacacacctgcctgtacaacaagatccactttagaactttcagctgacaaa 278

                                                                       
Query: 120 gtgaaaactcacttacttctagcacttcagaaaatggtggccttggaacagcatcagctc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gtgaaaactcacttacttctagcacttcagaaaatggtggccttggaacagcatcagctc 218

                            
Query: 180 aacatttccaacttgga 196
           |||||||||||||||||
Sbjct: 217 aacatttccaacttgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space:   112100
Effective search space used:   112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)