Query= MSMg01no115_c05.b1 MSMg01no115_c05.b1 CHROMAT_FILE:
MSMg01no115_c05.b1 PHD_FILE: MSMg01no115_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:00 2005
(461 letters)
>mm_chr3_24485268_24486129
Length = 862
Score = 642 bits (332), Expect = 0.0
Identities = 338/340 (99%), Gaps = 1/340 (0%)
Strand = Plus / Minus
Query: 5 gaattcc-aacacagtgcctattgcttttgcctttattccataagtggaatgtaagcctt 63
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gaattccaaacacagtgcctattgcttttgcctttattccataagtggaatgtaagcctt 281
Query: 64 tatttgaattcttttgtatttattttaaaaaatgcaagcccatgctttgttttattttta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tatttgaattcttttgtatttattttaaaaaatgcaagcccatgctttgttttattttta 221
Query: 124 ttttattttgtattacttattttattttattttcttaaatttcaaatgttattccccttc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ttttattttgtattacttattttattttattttcttaaatttcaaatgttattccccttc 161
Query: 184 tgggtttcccctctgcaaagcccctatcacatcacctctccccactttctctatgagaat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 tgggtttcccctctgcaaagcccctatcacatcacctctccccactttctctatgagaat 101
Query: 244 gtttactcacctaccaacccactcccacctcaccactctagcattcccctacactggtgc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 gtttactcacctaccaacccactcccacctcaccactctagcattcccctacactggtgc 41
Query: 304 atccagcctccacaatatcaagggcctctcctcccattga 343
||||||||||||||||||||||| ||||||||||||||||
Sbjct: 40 atccagcctccacaatatcaaggacctctcctcccattga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 862
Length adjustment: 10
Effective length of query: 451
Effective length of database: 852
Effective search space: 384252
Effective search space used: 384252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_c05.g1 MSMg01no115_c05.g1 CHROMAT_FILE:
MSMg01no115_c05.g1 PHD_FILE: MSMg01no115_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:00 2005
(648 letters)
>mm_chr3_24451042_24452089
Length = 1048
Score = 1089 bits (563), Expect = 0.0
Identities = 615/647 (95%), Gaps = 27/647 (4%)
Strand = Plus / Plus
Query: 3 ggggttgctagacatgtatcttagataaatatgcatgttccccatgctgtctcagtgaaa 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggggttgctagacatgtatcttagataaatatgcatgttccccatgctgtctcagtgaaa 262
Query: 63 agagcaagttataatggcaggcattgacctctggccttcacatgtatgtgcacatgtgtg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agagcaagttataatggcaggcattgacctctggccttcacatgtatgtgcacatgtgtg 322
Query: 123 catgtacatccccacatccacatagcacacacacacacacagacacacacacacacacac 182
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 323 catgtacatccccacatccacatagcacacacacacacaca--cacacacacacacacac 380
Query: 183 acacacacacacacacacacacacgtggatgttttgatacagcagacatgtgaaaggaca 242
||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 aca----------------------tggatgttttgatacagcagacatgtgaaaggaca 418
Query: 243 tttgttgaag-atgtataaatctgaccccacagacagtaggagcactgagcattggcttg 301
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tttgttgaagga-gtataaatctgaccccacagacagtaggagcactgagcattggcttg 477
Query: 302 atttgctatgcctcactattctttactaaagatgtgcatgtactgcatagccttccatag 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 atttgctatgcctcactattctttactaaagatgtgcatgtactgcatagccttccatag 537
Query: 362 cattgctgagctccactagtggtgaggacaaagagaaactcgccaaagaactgatcttga 421
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 538 cattgctgagctccactagtggtgaggacagagaaaaactcgccaaagaactgatcttga 597
Query: 422 ggtttgtgccacagctgttccttctgtggccttgtctcaggctggttagcttgccttgtg 481
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ggtttgtgccacagttgttccttctgtggccttgtctcaggctggttagcttgccttgtg 657
Query: 482 aattcctcaggattgaaatatagctcttggtttgggtgtggtgtctgcatacctagggga 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aattcctcaggattgaaatatagctcttggtttgggtgtggtgtctgcatacctagggga 717
Query: 542 ctggactgaagctgagaatcctatgggaaatctgcctgcctactggactggttggcagct 601
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 718 ctggactgaagctgaggatcctatgggaaatctgcctgcctacaggactggttggcagct 777
Query: 602 gctgagttaa-tatagttggtgtttgcaatgggaatgaactgctgcc 647
|||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 778 gctgagttaaatatagttggtgtttgcaatgggaatgaactgctgcc 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
