BAC Information

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BAC

Clone NameMSMg01-115E07
Chromosome3 (Build37)
Map Location 40,081,628 - 40,082,038
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115E07.T7 (MSMg01no115_e07.b1)MSMg01-115E07.TJ (MSMg01no115_e07.g1)
ACCAG326941AG326942
length744689
length of high quality
(start - end)
475 (46 - 520)411 (84 - 494)
definitionCHROMAT_FILE: MSMg01no115_e07.b1 PHD_FILE: MSMg01no115_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:10 2005CHROMAT_FILE: MSMg01no115_e07.g1 PHD_FILE: MSMg01no115_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCAGAGTGTTGGGTAAGAAAGGGGTGTGAATATTTGACATACAC
TGGAAGGCAAGGGTATTTTTTTAATTTATTTTTCTAATTAGGTATTTTCT
TCATTTACATTTCAAATGCTATCCCAAAAGTCCCCCAGACCTTCCCCCCT
CCCCTCCCCACCCACTCTCACTTCTTGGCCCTGGCGTTCCCCCATACTGA
GGCATATAAAGTTTGCAAGACCAAGGGGCTTCTCTTCTCAATGATGGCCG
ACTAGGCCATCTTCTGATACATATGCAGCTAGAGACAAGAGCTCCAGGGG
GTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGATCCCAT
CAGCTCCATGGGTACTCTCTCTAGCAACTCCATTGGGGGCCCTGTGTTCC
ATCCAATAGCTGACTGTGAGCATCTACTTCTGTGTTTGCATAGCCTCACA
AGAGACAGCTATATCAGGGCTCCTTTCAGCAAAATCTTGCTGGTATATTC
CATGGTGCCAGCGTTTGAAGGCTGATAATGGGATGGATCCCCGGCTATGG
CAGTCCTCTAGATGGGCCGCCCTTTCACCTCAGCTCCTATGTGGTACATT
TACCCCCTGGAGTACTACCTAGTCTTTTACACCCAATGAATTCCCTGACA
TTCCCTAGGGCTAAAGGATGGCCCCTAGAAGGGCACCCTTCTTG
GGGGAAGGCACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTATTATATGGGCAG
GAAGCTCATGACAGTTCTCAGGATGAGAATTAGGTATTGGGATAAAATAC
ATAGGGATGAATTAAAAAATAAGAAACACTAAGTATATTCATTTATATAA
TCAAATGCTTGTTTGTTTCAAAATATCATTCATATGTAAAATGAAAAATT
CCCCAGTAAGTTAGAACAGGAAAAATAGGATCTATTTATAGTTCCTGGAA
AGTTAGAAGCCAAGAGTGGGTCTGAATCATGACTTGAGAAAATTCTCTGT
GACCTTTTCCATCTGTCTCTGCTAGTGACACAGCAATGACACCAATGATC
CTGATATCCCACCTCTGACATTCCTTAAGAAAGTATTGCCCAAGATCTAA
GCTAGGTGCTAGGCCTTTAGGGCAAGACACATATACATGCACACACACAC
ACACGCTCNTAGAGAGAGAGAGACAGAGAGATATAGAGAGAGAGATATAG
AAGAATATACTTACCTTTTCGTTCACTCTTTTTTTCTCTCCCCCGGTTTT
TTCGTTCTTTTTTCTTTTTTTTTTCCCCTCCCTTTTTTTCTTCTCCCTTT
TCCCCTTTCCCCGCATTTATTCTTTCCTACTCACATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_e07.g1 MSMg01no115_e07.g1 CHROMAT_FILE:
MSMg01no115_e07.g1 PHD_FILE: MSMg01no115_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:10 2005
         (411 letters)



>mm_chr3_40081428_40082238
          Length = 811

 Score =  772 bits (399), Expect = 0.0
 Identities = 408/411 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctattatatgggcaggaagctcatgacagttctcaggatgagaattaggtattgggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 agctattatatgggcaggaagctcatgacagttctcaggatgagaattaggtattgggat 552

                                                                       
Query: 61  aaaatacatagggatgaattaaaaaataagaaacactaagtatattcatttatataatca 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 551 aaaatacatagggatgaattaaaaaataagaaatactaagtatattcatttatataatca 492

                                                                       
Query: 121 aatgcttgtttgtttcaaaatatcattcatatgtaaaatgaaaaattccccagtaagtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aatgcttgtttgtttcaaaatatcattcatatgtaaaatgaaaaattccccagtaagtta 432

                                                                       
Query: 181 gaacaggaaaaataggatctatttatagttcctggaaagttagaagccaagagtgggtct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 431 gaacaggaaaaataggatctatttatagttcctggaaagttagaagccaagaatgggtct 372

                                                                       
Query: 241 gaatcatgacttgagaaaattctctgtgaccttttccatctgtctctgctagtgacacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gaatcatgacttgagaaaattctctgtgaccttttccatctgtctctgctagtgacacag 312

                                                                       
Query: 301 caatgacaccaatgatcctgatatcccacctctgacattccttaagaaagtattgcccaa 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 311 caatgacaccaatgatcctgatctcccacctctgacattccttaagaaagtattgcccaa 252

                                                              
Query: 361 gatctaagctaggtgctaggcctttagggcaagacacatatacatgcacac 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gatctaagctaggtgctaggcctttagggcaagacacatatacatgcacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)