CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATGCAGCCAACCGTAAGAGCTTCGTGCCCGTGCACCTGACTGCA
GCAGCAGAACCCGAACTTGATGGTTACAGGGGATGACAGAAAGGGAACAT
TGAAAGTGCTATTATGCAGTTTACAAGGGAAAGGTTTCAACACATTTCAG
CTTCCTCTGGTTATCATAGATGGGTCTCTCACATTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCATCTTTCATGTGTATGCTTATT
AGTTGTGCATAGTTTTAATTTTGAGACTTGATTTGTCTTTGGTGGCCACC
ATCTCTTAACACCCTGCATCTTTTAGGATTTCACATCATTTGACAGATTT
TCAGTCTGCTTTGCGCCTGTAAATAAAATTCATAAATATTGGATTCATGT
ACATGGTCCTCTTTGGAAAAAAAGGGGGGGACATTATCCCACTTCATCTC
TGTACTTTAATCATATATACCGAGACCACATTTTACATTACTAAGTTATT
TTTTCTTGATTAAAAGTAGCAATGTGTTCAGTTTAAGGCTTTTGTTATTT
CAAGAACTAAAATGGTTTTCAGTAGAAACATTCCTGTTTTAAACTATATA
GCATGCATATTCTTCCCAGCTGAATGTGTCACATAAAGACGATTCTAGAA
ATAGAAGTTATTTGCCATTATTTTATACAATGTAC

NTTACTATTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGATAGAAATTT
TAGGGTCAATTTTATGTGTATAATATGATCCTCAATTGATGATATTTTTA
ATTCTTTTTTTCCAATTTGTGTCTTCCTGCTCTCCATTAGTTGTCTTATT
GCTTTGACTAGAACTTCAAGTACTATATTGTATGATAGGAAGACAGTGGC
CAGCCATGCCTTGTCCTTGATTTTAAAGTAATTGTTTTAATTCTCTCTCC
ATTTAGTTTGAAGTATATTGCTTTGATTATATTCACATATGTGCCTTGTA
TCCCTGGTCTCTCTTATACTTTTAAAATGTAGAGGTATTATATTTTATCA
AAGGCTTTTTAGCATCTAATGAGATAATCATGTGATTCTTTTCAGTCAGT
TTGTTTATATGATGAATTACATTGATAGATTTTCATATGTAGAACCATTC
CTATTTCTCTGGGATAAAGTCTACTTGATCATAATGGATGATGCTCTTGT
TGGTTCTTGGATTCCTTTCGCAAGTATTTTATTGAGTATTTTTCCATCAC
TATTCATAGGAGAATTTGGCTGAACTTCTTTTCCTTTGTTGAATCTTTGC
GTGGCATAGTTATCAGCATTACTGTGATTTCATAGAACAAGC

Query= MSMg01no115_e09.b1 MSMg01no115_e09.b1 CHROMAT_FILE:
MSMg01no115_e09.b1 PHD_FILE: MSMg01no115_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:11 2005
         (609 letters)



>mm_chr3_17229344_17230352
          Length = 1009

 Score = 1023 bits (529), Expect = 0.0
 Identities = 581/605 (96%), Gaps = 14/605 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatgcagccaaccgtaagagcttcgtgcccgtgcacctgactgcagcagcagaa 64
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatgcagccaaccgtaagagctccgtgcccgtgcacctgactgcagcagcagaa 264

                                                                       
Query: 65  cccgaacttgatggttacaggggatgacagaaagggaacattgaaagtgctattatgcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cccgaacttgatggttacaggggatgacagaaagggaacattgaaagtgctattatgcag 324

                                                                       
Query: 125 tttacaagggaaaggtttcaacacatttcagcttcctctggttatcatagatgggtctct 184
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttacaagggaaaggcttcaacacatttcagcttcctctggttatcatagatgggtctct 384

                                                                       
Query: 185 cacattctctctct-ctctctctctctctctctctctctctctctctctcatctttcatg 243
            |           | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ta-----------tgctctctctctctctctctctctctctctctctctcatctttcatg 433

                                                                       
Query: 244 tgtatgcttattagttgtgcatagttttaattttgagacttgatttgtctttggtggcca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgtatgcttattagttgtgcatagttttaattttgagacttgatttgtctttggtggcca 493

                                                                       
Query: 304 ccatctcttaacaccctgcatcttttaggatttcacatcatttgacagattttcagtctg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ccatctcttaacaccctgcatcttttaggatttcacatcatttgacagattttcagtctg 553

                                                                       
Query: 364 ctttgcgcctgtaaataaaattcataaatattggattcatgtacatggtcctctttggaa 423
           ||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ctttgtggttgtaaataaaattcataaatattggattcatgtacatggtcctctttggaa 613

                                                                       
Query: 424 aaaaa-gggggggacattatcccacttcatctctgtactttaatcatatataccgagacc 482
           ||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 614 aaaaaagggggggacattatcccacttcatctctgtactttaatcatatgttccgagacc 673

                                                                       
Query: 483 acattttacattactaagttatttttt-cttgattaaaagtagcaatgtgttcagtttaa 541
           |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 674 acattttatattactaagttatttttttcttgattaaaagtagcaatgtgttcagtttaa 733

                                                                       
Query: 542 ggcttttgttatttcaagaactaaaatggttttcagtagaaacattcctgttttaaacta 601
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ggcttttgtcatttcaagaactaaaatggttttcagtagaaacattcctgttttaaacta 793

                
Query: 602 tatag 606
           |||||
Sbjct: 794 tatag 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)