Query= MSMg01no115_h21.b1 MSMg01no115_h21.b1 CHROMAT_FILE:
MSMg01no115_h21.b1 PHD_FILE: MSMg01no115_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:27 2005
(343 letters)
>mm_chr3_145462448_145463193
Length = 746
Score = 511 bits (264), Expect = e-149
Identities = 325/348 (93%), Gaps = 7/348 (2%)
Strand = Plus / Plus
Query: 1 gagatagttgtttataaaaataaatttcaaaagtcagtaactgcacaagtaattaggcgc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 201 gagatagttgtttataaaaataaatttcaaaagtcagtaactgcacaagtaactaggggc 260
Query: 61 tggagaggtgtcttggtaaagtgcttgttctgcgagcgtatggacaagagacttgggagg 120
||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||
Sbjct: 261 tggagaggtgtcttggtaaagtgcttgctctgcaagcgtatggacaagatacttgggagg 320
Query: 121 ctccggtatcctctcctagagtgtattccttcccacagtcctttggactctacctgccct 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcccgtatcctctcctagagtgtattccttcccacagtcctttggactctacctgccct 380
Query: 181 tattattcattacaaccaatgacctgtgtgtcaccccgaagttataatattcagtcccac 240
||||||||||||||||| ||||| | ||||||||||| ||||||||| ||||||||||||
Sbjct: 381 tattattcattacaaccgatgacatatgtgtcaccccaaagttataaaattcagtcccac 440
Query: 241 tgaatttgctgtgactcgagtctgtgtgactgtgtgacttcttctcttgctga-tt---- 295
|||||||||||||||| |||||||| ||||| |||||||||||||| | ||| ||
Sbjct: 441 tgaatttgctgtgacttgagtctgtatgactctgtgacttcttctcct--tgagtttagt 498
Query: 296 gacttcagagttgtttctaggttcttgctgctgtgaccaatcctgcaa 343
||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gacatcagagttgtttctaggttcttgctgctgtgaccaatcctgcaa 546
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 746
Length adjustment: 9
Effective length of query: 334
Effective length of database: 737
Effective search space: 246158
Effective search space used: 246158
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_h21.g1 MSMg01no115_h21.g1 CHROMAT_FILE:
MSMg01no115_h21.g1 PHD_FILE: MSMg01no115_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:27 2005
(237 letters)
>mm_chr3_145555190_145555825
Length = 636
Score = 441 bits (228), Expect = e-128
Identities = 234/236 (99%), Gaps = 1/236 (0%)
Strand = Plus / Minus
Query: 1 cagtaaacaatcatggatatttcacaggagactcagacattgtttcgagactgaccttag 60
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 435 cagtaaacaatcatggatatttcacaggagactcagacattgttt-gaggctgaccttag 377
Query: 61 gaaccatttcctgactgcgctcccaggcctgggtggaggcagccccctctggctctcccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gaaccatttcctgactgcgctcccaggcctgggtggaggcagccccctctggctctcccc 317
Query: 121 ggaccatcagcaatcattgtacatgctctgcctcttttgaaggaaatgactttctcaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggaccatcagcaatcattgtacatgctctgcctcttttgaaggaaatgactttctcaaga 257
Query: 181 tcatgatgattctaagggggtagatacaaggcgagtcagaaggaagctcagaaagg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tcatgatgattctaagggggtagatacaaggcgagtcagaaggaagctcagaaagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 636
Length adjustment: 9
Effective length of query: 228
Effective length of database: 627
Effective search space: 142956
Effective search space used: 142956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
