TATCCTTTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCATATGCTCTTACTGCATTAGTTCAGAACATTGGA
TTGTACTGACCATGCTTATGCTTCTTGTTGAGATTTTCTAAATATAATTT
ATTTTAAAATCTCCATCATATTAAATGTATGGGATTTTTTCCATTGGTAT
TGAAAGTTGGACTGGAGAGATGACTCAGTGGTCAAGAATTCTAGCTGCTC
TTCCAGAGGATCTGGGTTCAATTCCCAGCACTAATATGGCAGCTCACATT
TGTCTGTAACTTCAGTTACAGGGGACCCAATACACACATATATACAGTCA
AACACCAATGGACATAAAATGAAAACCTATAGATTAGGAAAAATCTCGAT
AAATCCCACTTCCAATGGAGAGCTAATATGCCAAATATATAAAGAACTCA
AGAAGCTAACCACCCAAAACAACCCAATAAAAAAATGGCGTATAAAACTA
AACTGAGAATTCACAACAAAAGAATCTTGAGTGACTGAGAAACACTTAAA
GAAATGTTCAAAGTCCTTGGTGATCAGAGAAATGCAAACCAGAATGACCC
TGAGATTCCACCTTACATAAATCAGAATGGCTAAGATCAAAACCTCAGAT
GACAACACATGTTGACTAGGATGTGGAGAAAGAGGAACACTC

CTTTTNCTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCAAACTTTTAGTT
CAATTCAGAATGTTAGGTATATAACTTATCCCAACTTTGAAATTTAAGAA
GAAAATAATATGAGTACAATATGAAAAAAGAGGTAACTGGGCTTGAACTT
TAGTAAGTATATTACTAAAATTTGATCCCACATATAAAAGATACAGGATG
CAGAGTCCATAAAACTAAGTAGAGATGAAGTCAGGAGAGATAGTGTTTTC
ATATTTTAAGGCTTGCTTAAATTAGTCTGACTGAGAAGTTGTGAGTGGAG
ACTGTGAGCCTCACATCCAGGCAGAGTGTTCATCATCACAAGATCACTGT
GTATTTTCAGACTCATTCTAGTCAATGTCTACTGAGAGATTACTCCAAAT
GTAGGAGACAAGAGGAAAAGATAATTGAATTCTGGGACCTATACTAATAG
TGCATAAAATTCCAGTAGAACCATAGAGATCTCTGATAAACCAGAAGCAG
AGTTATATTAAAATCAATGACTATGAGTGACTTCTGAGTGAAGATCAAGT
TGTCTTCAGTGTGCCAACCTCTTTACTATTTAGGGTCTACATAACCACAT
ATAGTTAGAGATAAAACTGTGTTATAGGATGCCAATTGCCATT

Query= MSMg01no116_c04.g1 MSMg01no116_c04.g1 CHROMAT_FILE:
MSMg01no116_c04.g1 PHD_FILE: MSMg01no116_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:18 2005
         (553 letters)



>mm_chr3_140191199_140192150
          Length = 952

 Score =  992 bits (513), Expect = 0.0
 Identities = 543/553 (98%), Gaps = 1/553 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgcaaacttttagttcaattcagaatgttaggtatataacttatcccaactttgaaat 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 752 tctgcaaacttttagttcaattcagaatgttaggtatataacttatcctaactttgaaat 693

                                                                       
Query: 61  ttaagaagaaaataatatgagtacaatatgaaaaaagaggtaactgggcttgaactttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ttaagaagaaaataatatgagtacaatatgaaaaaagaggtaactgggcttgaactttag 633

                                                                       
Query: 121 taagtatattactaaaatttgatcccacatataaaagatacaggatgcagagtccataaa 180
           | ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 632 t-agtatataactaaaatttgatcccacatataaaagatataggatgcagagtccataaa 574

                                                                       
Query: 181 actaagtagagatgaagtcaggagagatagtgttttcatattttaaggcttgcttaaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 actaagtagagatgaagtcaggagagatagtgttttcatattttaaggcttgcttaaatt 514

                                                                       
Query: 241 agtctgactgagaagttgtgagtggagactgtgagcctcacatccaggcagagtgttcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 agtctgactgagaagttgtgagtggagactgtgagcctcacatccaggcagagtgttcat 454

                                                                       
Query: 301 catcacaagatcactgtgtattttcagactcattctagtcaatgtctactgagagattac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 453 catcacaagatcactgtgtattttcagactcattctagtcaatgtctactgagaggttat 394

                                                                       
Query: 361 tccaaatgtaggagacaagaggaaaagataattgaattctgggacctatactaatagtgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tccaaatgtaggagacaagaggaaaagataattgaattctgggacctatactaatagtgc 334

                                                                       
Query: 421 ataaaattccagtagaaccatagagatctctgataaaccagaagcagagttatattaaaa 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ataaaattccagtagaagcatagagatctctgataaaccagaagcagagttatattaaaa 274

                                                                       
Query: 481 tcaatgactatgagtgacttctgagtgaagatcaagttgtcttcagtgtgccaacctctt 540
           ||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 273 tcaatgactgtgagtgatttctgagtgaggatcaagttgtcttcagtgtgccaacctctt 214

                        
Query: 541 tactatttagggt 553
           |||||||||||||
Sbjct: 213 tactatttagggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 952
Length adjustment: 10
Effective length of query: 543
Effective length of database: 942
Effective search space:   511506
Effective search space used:   511506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)