BAC Information

Click to search

BAC

Clone NameMSMg01-116E06
Chromosome3 (Build37)
Map Location 15,103,493 - 15,104,054
singlet/doubletsinglet
Overlap genenone
Upstream gene0710005M24Rik, EG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323
Downstream geneLOC100039985, LOC751864, Sirpb1, LOC668101, LOC100038947, LOC622425, LOC664795, LOC381484, Ythdf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116E06.T7 (MSMg01no116_e06.b1)MSMg01-116E06.TJ (MSMg01no116_e06.g1)
ACCAG327688AG327689
length716715
length of high quality
(start - end)
567 (46 - 612)543 (78 - 620)
definitionCHROMAT_FILE: MSMg01no116_e06.b1 PHD_FILE: MSMg01no116_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:28 2005CHROMAT_FILE: MSMg01no116_e06.g1 PHD_FILE: MSMg01no116_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCATCTAAATTTGCGGCGCTAAACGACTCCTATTTTCAGAAATCCGCG
GAATTCCCATGAATGTCACTAGTCTCCTCCTGGCTTCTATACCATATCAA
ATGACAGTACAGTAACCTCCGTTTTCTTTTCCCCTCCCTTTTCTCTTCTA
GGTTTCTTCCCTTCCCTTCTTTCTCTGCTTGTATCTATTGTGTGTTGCCA
CATGCCAAGCACTGTTATAAATACTTCAAAAAGAATGACTTAAAACACTG
GCTACATTTATCTACAAAGAGCTTAGAGTCCAGTAGAGGATGTTAGATAG
CCATGTTTTTTTCTGATTTCAGTGTGAGGGTTATGAAGATGAAGTTGAGC
ATACAGTGAACAGGGAGCCCAAGGAGGGAGATGTGAGCACTGAAGAAGAT
GGACTTCAGTGTAAAGAGAAGATATAAATAGAGAAAGGGCTTCCATGAGA
GATAGAGTGAAGACCAGAGAGGCTTATGTATATAAGAAAACAACATCGTA
CTCAATCAGAGTGATACAGGGGAGATTATCACAGTTGGGAAGGAAAAGGT
AGAGGATAAGATTCGAAAGACAGGCTTTGCATCTCTCCCAAAGAGTTTAA
AATTTATCATCTAGATAATGGAGTGTGGACATTGTTGGGCATAAGAGTCA
TATAAAGATAATTGTAAGAATCATAAGCTTCGTCATATTGTGAACAATGT
TATATTTTCCTTTCAA
NNTTTCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATC
ATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACAAGAT
GATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGA
TGGATTTTCTTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACT
TGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAACAAG
AATTTTATTGATGATTTTTGCATCGATAGTCATAAGAGAAATTGGTCTGA
AGTTCTCTATCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATT
GTGGCTTCATAGATTGAGTTGGGTAGAGGACCTTCTACTTCTATTATGTG
GAATAGTTTGTGCAGAATTGGAATTAGATCTTCTTTAAAGGTCTGATAGA
ACTCTGCACTAAACTCATCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTA
TTAATGACTGCTTCTATTTCTTTAGGGGATATGGGAGTGCTTAGATTGTT
AACTTGATCCTGATTTAACTCTGGTACATGTTATCTGTCTAGAAATTTGA
TCATTTCGTCCAGTTTTTACAGTTTTGTTGAGTATAGCTTTCTGTACAAC
GATCTGATGGTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_e06.b1 MSMg01no116_e06.b1 CHROMAT_FILE:
MSMg01no116_e06.b1 PHD_FILE: MSMg01no116_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:28 2005
         (567 letters)



>mm_chr3_15103159_15104124
          Length = 966

 Score =  942 bits (487), Expect = 0.0
 Identities = 545/565 (96%), Gaps = 6/565 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcccatgaatgtcactagtctcctcctggcttc-tataccatatcaaatgacagta 64
           |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 896 gaattcccatgaatgtcattagtctcctcctggcttcatataccatatcaaatgacagta 837

                                                                       
Query: 65  cagtaacctccgttttcttttcccctcccttttctcttctaggtttcttcccttcccttc 124
           | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 ctgtagcctcccttttcttttcccctcccttttctcttctaggtttcttcccttcccttc 777

                                                                       
Query: 125 tttctctgcttgtatctattgtgtgttgccacatgccaagcactgttataaatacttcaa 184
           ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 776 tttctctacttgtatctattgtgtgttgccacatgccaagcagtgttataaatacttcaa 717

                                                                       
Query: 185 aaagaatgacttaaaacactggc-tacatttatctacaaagagcttagagtccagtagag 243
           ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 716 aaagaatgacttaaaacactggcttgcatttatctacaaagagcttagagtccagtagag 657

                                                                       
Query: 244 gatgttagatagccatgtttttttctgatttcagtgtgagggttatgaagatgaagttga 303
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gatgttagatagcca--tttttttctgatttcagtgtgagggttatgaagatgaagttga 599

                                                                       
Query: 304 gcatacagtgaacagggagcccaaggagggagatgtgagcactgaagaagatggacttca 363
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 598 gcatacagtgaacagggagcccaaggaaggagatgtgagcactgaagaagatggacttca 539

                                                                       
Query: 364 gtgtaaagagaagatataaatagagaaagggcttccatgagagatagagtgaagaccaga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gtgtaaagagaagatataaatagagaaagggcttccatgagagatagagtgaagaccaga 479

                                                                       
Query: 424 gaggcttatgtatataagaaaacaacatcgtactcaatcagagtgatacaggggagatta 483
           |||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 478 gaggcttaagtatacaagaaaacaatatcgtactcaatcagagtgatacaggggagatta 419

                                                                       
Query: 484 tcacagttgggaaggaaaaggtagaggataagattcgaaag-acaggctttgcatctctc 542
           ||||||||||||||||||||||||||||| ||||||||||| | || |||||||||||||
Sbjct: 418 tcacagttgggaaggaaaaggtagaggatgagattcgaaagcaaag-ctttgcatctctc 360

                                    
Query: 543 ccaaagagtttaaaatttatcatct 567
           |||| ||||||||||||||||||||
Sbjct: 359 ccaaggagtttaaaatttatcatct 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 966
Length adjustment: 10
Effective length of query: 557
Effective length of database: 956
Effective search space:   532492
Effective search space used:   532492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)