Query= MSMg01no116_h01.b1 MSMg01no116_h01.b1 CHROMAT_FILE:
MSMg01no116_h01.b1 PHD_FILE: MSMg01no116_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:42 2005
(585 letters)
>mm_chr3_104099060_104100048
Length = 989
Score = 944 bits (488), Expect = 0.0
Identities = 509/518 (98%), Gaps = 4/518 (0%)
Strand = Plus / Minus
Query: 72 agactcactgggtttctgtcggtttctgtttccatggcagtgaggatgactcactattaa 131
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 agactcactgggcttctgtcggtttctgtttccatggcagtgaggatgactcactattaa 930
Query: 132 aagctggactgttccttacaggccacgtcttgagcaatatgcttccagctctgctcattt 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 aagctggactgttccttacaggccacgtcttgagcaatatgcttccagctctgctcattt 870
Query: 192 gacttcagattcaattggtgtatcattctcagttgcgcaaagaacgtgtgcgtgtgtgtg 251
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 869 gacttcagattcaattggtgtatcattctcagttgtgcaaagaacgtgtgcgtgtgtgtg 810
Query: 252 catgcgtgtgcgtgtgcatgacgtgtagggaatcagaagtttaaagatttgttcttgttt 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 catgcgtgtgcgtgtgcatgacgtgtagggaatcagaagtttaaagatttgttcttgttt 750
Query: 312 ga----tagtattgtttgatctaacacattcatctttcatcttcctaactgtgggaacag 367
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 749 gatagttagtattgtttgatctaacacattcatctttcagcttcctaactgtgggaacag 690
Query: 368 gaccctggctctcttctgtaccttttctgctcagtattcattaaagagagcatgtttaat 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gaccctggctctcttctgtaccttttctgctcagtattcattaaagagagcatgtttaat 630
Query: 428 ataaacctctaaaacgatggccaataattttacagggaacaaaactctaactttaaagac 487
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ataaacctctaaaactatggccaataattttacagggaacaaaactctaactttaaagac 570
Query: 488 tttcactttctatacttactacttttcccccctatcaaaatactgtgagtgctcattaga 547
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttacactttctatacttactacttttcccccctatcaaaatactgtgagtgctcattaga 510
Query: 548 ttaaattctaacatttggcaaccagctctatgtagtta 585
||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttaaattctaacatttggcaaccagctctatgtagtta 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 989
Length adjustment: 10
Effective length of query: 575
Effective length of database: 979
Effective search space: 562925
Effective search space used: 562925
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_h01.g1 MSMg01no116_h01.g1 CHROMAT_FILE:
MSMg01no116_h01.g1 PHD_FILE: MSMg01no116_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:42 2005
(247 letters)
>mm_chr3_104009122_104009768
Length = 647
Score = 462 bits (239), Expect = e-135
Identities = 245/247 (99%)
Strand = Plus / Plus
Query: 1 cttataccaaaaaccaaaacaatgaaaggaatgagatgagctgggttctaccccacactc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 cttataccaaaaaccaaaacaatgaaaggaatgagatgagctgggttctagtccacactc 260
Query: 61 tgtcactgcttaagattcaacttctttctttgaagtcatggtactgactggattgatgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcactgcttaagattcaacttctttctttgaagtcatggtactgactggattgatgta 320
Query: 121 gttctctccagttgatgacaacctgtaaacccgaatagaaaacctaacagcacaaagagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttctctccagttgatgacaacctgtaaacccgaatagaaaacctaacagcacaaagagc 380
Query: 181 aagaggtagcaacaccacaggctgctttgaactgcctcttcaaaggattaatcttaatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaggtagcaacaccacaggctgctttgaactgcctcttcaaaggattaatcttaatgt 440
Query: 241 agagcac 247
|||||||
Sbjct: 441 agagcac 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
