BAC Information

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BAC

Clone NameMSMg01-117A10
Chromosome3 (Build37)
Map Location 92,697,141 - 92,697,661
singlet/doubletsinglet
Overlap genenone
Upstream genePglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik
Downstream geneLce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117A10.T7 (MSMg01no117_a10.b1)MSMg01-117A10.TJ (MSMg01no117_a10.g1)
ACCAG328262AG328263
length718711
length of high quality
(start - end)
540 (74 - 613)522 (70 - 591)
definitionCHROMAT_FILE: MSMg01no117_a10.b1 PHD_FILE: MSMg01no117_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:27 2005CHROMAT_FILE: MSMg01no117_a10.g1 PHD_FILE: MSMg01no117_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAGAGCGCGGA
ATTCATTTTTAATTCCCGAATAGATCCCATTGTGTAAAATACCACATTAT
CTGTATCGGTTCTTCCATTGAGGAGCATCTGGGTTGTTTCTGGCTTCTGG
CTATTATAAATAAGGCTGATATAAACTTACTGGAGCATGTGTTCTTGTTA
TATGTACGGCCATATTTTGAGTATATTCCCAGGAGTGGTATATAGCTGTG
CCTTCAGGTAGAATTAGTTCCAATTTTCTGAGGAACAGCTAGATTGATTT
CCAGAGTGGTTTTATCAGCTTGCATTCCTACCAGAAATGGAGGAGTGTTC
CTTTTTCTCCACATCCTTGTCAGCATCTGCTGTCACCTGAGTTTTTGATC
TTAGCCATTCTGATTGGTGTCAGGGTTGTTTTGATTTGCATTTTCCTGAT
GACTAAGGATGCTGAACATTTCTTAGGTGCTTCTTGGTCATTTGAGATTC
CTCAGTTGAGAATTGTTTGTTTAGCTCTATACTCCATTTTAAATTGGGTT
AATTGTTTTTCTGGAGTCTAACTTCTTGAATTCTTTATATATCTTGGATA
TTAGCTCTCTATCAGATATAGGGCTGATAAAAATCTTTTCTGAATCTGTA
GGTTGCCATTTTGCCTTATTGACAGTGTCCTTTGCCTTGCATAAGCTCTT
CAGTTTCATGAGGTCCTA
CGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAAGCTCCATCATTCCCTGCCTTTGTAGACT
GGAAATTAACTGCCCATGTACTAAATCCTGCTGCTAGTTTAGAAAGTGTG
TGCTGGGGTGTAAGAGCATTTCCTGGCAAGCTGCTGCCTCTCAATCAGAA
CTGAGAAGATATGGTTTCTCTGACCCGTAGACTTGTCATTTGTACCATCT
CCCTGGTGGCTGTAAGGATTGCTACTCCCTCAATTTCAGGGCTGGACAGT
ATGCCCCTCCAGATAAGAAGGGTCACTGTGAGAACAGATTGCATTCTGTT
AGAACTTTCTGGCCAGAGTTCTTCCTTCCTCCCTCCTCCAGCTCCAAAAA
GCTGTCTCTGATGATTTAAGGATCAAATTTTGCACAGGCTGAGCTTTCTG
TGACTCCTGGTCCTGGTGGGTGTGGAGGACTCATCCATTAGAGCATCGTT
GTGTGTCTGTGGAGGCCAGAGTTCCAGAGTATAGTGCCCTTTTGTAGTAT
CCCACTTCCATCAGTGGCAAGGGAAAGATTATTTCCTCTGGCTGACAGTC
CAGTGCCCAAATCCTTCGGCCACGTTCACAAACCCACACTCTACTAGCTC
TGGTATTGCCTGACCAGTGTGATGGGGCATCGGTATGAGCAGCCTGGCCA
GAGTTCTACGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_a10.g1 MSMg01no117_a10.g1 CHROMAT_FILE:
MSMg01no117_a10.g1 PHD_FILE: MSMg01no117_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:27 2005
         (522 letters)



>mm_chr3_92696940_92697861
          Length = 922

 Score =  969 bits (501), Expect = 0.0
 Identities = 516/521 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   aagctccatcattccctgcctttgtagactggaaattaactgcccatgtactaaatcctg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aagctccatcattccctgcctttgtagactggaaattaactgcccatgtactaaatcctg 261

                                                                       
Query: 62  ctgctagtttagaaagtgtgtgctggggtgtaagagcatttcctggcaagctgctgcctc 121
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 262 ctgctagtttagaaagtgtgtgctggggtgtaagagcatttcctggcaagatgctgcctc 321

                                                                       
Query: 122 tcaatcagaactgagaagatatggtttctctgacccgtagacttgtcatttgtaccatct 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcaatcagaactgagaagatatggtttctctgacccgtagacttgtcatttgtaccatct 381

                                                                       
Query: 182 ccctggtggctgtaaggattgctactccctcaatttcagggctggacagtatgcccctcc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ccctggtggctgtaaggattgctactccctcaatttcagggctggacagtatgcccctcc 441

                                                                       
Query: 242 agataagaagggtcactgtgagaacagattgcattctgttagaactttctggccagagtt 301
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agataagaagggtcactatgagaacagattgcattctgttagaactttctggccagagtt 501

                                                                       
Query: 302 cttccttcctccctcctccagctccaaaaagctgtctctgatgatttaaggatcaaattt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cttccttcctccctcctccagctccaaaaagctgtctctgatgatttaaggatcaaattt 561

                                                                       
Query: 362 tgcacaggctgagctttctgtgactcctggtcctggtgggtgtggaggactcatccatta 421
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 562 tgcacaggctgagctttctgtgactcctggtcctggtgggtgtggaggaatcatccatta 621

                                                                       
Query: 422 gagcatcgttgtgtgtctgtggaggccagagttccagagtatagtgcccttttgtagtat 481
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gagcatcgttgtgtgtctgcggaggccagagttccagagtatagtgcccttttgtagtat 681

                                                    
Query: 482 cccacttccatcagtggcaagggaaagattatttcctctgg 522
           |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 682 cccactcccatcagtggcaagggaaagattatttcctctgg 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)