GGGAAACAGAGGAGGGCAGCGGGACGNANNCCCCTCCGGGGGGAACATAA
AGAGAGACAACCACAAACAGACGATTGAGCGGAGGCGGTGCTGGGTGTCT
ACGCCACANCAGAGAGCACCTAGCATTCCATCCTCTCTGTTCGTCATTAC
CTGGCGCGGACGGAGACGCGTAGCTCCGGCGCCGCTCCTACGGCGNCACT
CCGACAGCGATCTCAACTCTCACCCATCTCATCACAGCACCGAGCACCAT
ATACTACACCTAACTAGCTTCTATCACCAACAGCTTNCCTGTATAGTATG
CGTGTCTCGCGACGCAAGTCAGTCATGGCGCACGCGAGAGTATCAGATAG
CACAGAGTGTGATAAAGATAACGATACTCCACTCTNACAACATCCGAATC
ATATCTGACGGCCTTGTGAGATCTGAAAGATAACTGTGGATCGTACGAGC
CGCAACGATAGCATACTATCTTCAAGTATATCTATGTGTAATCTACTAAT
ACAATCTTATCCTCTGTTGTCACATTGTATTACACAATGAACACTACCAC
TCAAACTGTTATGATACTGGTGGATTGTTAGCATATGTGAATCGCTCACC
CACACTCCTATTTAACAGAGCGTACGGCGACAAACACTATATAGATAACG
AAGCGCGAGAGGACAGATGGACTAGTAGTATCGCTCTACACGCAGAGTGA
TATCTATGGTCATCGATTTGCGATCAACGCGCATGATAAGATTAGAGATG
AACTGATTGACTAGTATCACAACACGCATGGCTATACGAGCGACTGTGAG
TGCGTGTAGAACATATCGCGACGCCGTTCAATTCGCGTCGTATGCGATAA
TGCTACGAGCGATTCTCAGGTCGACTCGTAAAATACATTATGACCTAACG
CCATATTACTCGTCTCATATTCGTTATCATCATGATATCACCGTTATGCT
ATGTTATACGCTGGATGCATAGAGCAGCCGCGGGCGCTGAGCGGGTGTGA
CGCGATGATGGAATAATAGTAGGCCATCTATGATGCACGAATGTGCACAT
GTTGACTGATCGAATCCAGAACNACAAGGCGATTCGATATGTACAGTGTG
CTCTGCTGAGATATAGCTCGCGCGTACTCGTATGGCGCATCCTTACAATC
CACTCGATTANTCCACCNTACTATTTGGCGATCTCCATCTTCTACTGCTA
TCACACCCTCCGACCCCTACGTACTCTNCTCTCTACACGGTTATACCTTC
CATGAAGAAACACANCATAAGTCATATAGCGTGTCAACATGTACGACATC
GTACATTCGTTCCCGCCTCTATCCGCCACCGCGCACACTACGACC

NTTTCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTAAGTAACCTTCACAACTGGGT
TAACAAATGTGCCATTTAAAAATTGACTTTAGTCATATCCGTAGCACATT
GAAAAAATGTAAAGATATTGTACTGTAATCACATTGTTTTAAATTTTATT
ATCTTTTTAAAAAAATCTGTGAATTTCAAAAGTTGTGATAAGTATTTATT
ACAAAATCCATTTTGTATGCTTATAAAAGTATTAAATGTTTTTTGATATA
ATTGTTTTTCAAATAATAAATATTTGGTTGTCCCAAAGAACATAAACTTT
AAGTCCATTTTGTCTCTGTTTTGACATGAAAGAATAATAATTTGCCAGCA
AATTTTAATAAATGAATGATAAAGCATGAGTAAATAAATGGGCAAAACTA
ATAATAGTCAAATTTCATCATAGATAATATTTTTAGTTTTCTAATTTGAG
ATGATGATGACCCAGTGTACTTTTAATTTAATAGTATAAACAATAGTTAC
ATAAAAAATTTAAATATAAAAAGAAATCTGAAGCTTATTGTTATCATTCT
GTCTAAGCTCCACCCCACAGTTACCTGGCAACAGCCAGGTGTGCCTGACC
CACTATAGAAGGGGCTGCTTAACCCCTCCTTCTCTCCTGTTCCTCTTCTA

Query= MSMg01no117_j03.g1 MSMg01no117_j03.g1 CHROMAT_FILE:
MSMg01no117_j03.g1 PHD_FILE: MSMg01no117_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:10 2005
         (624 letters)



>mm_chr3_124306388_124307411
          Length = 1024

 Score = 1158 bits (599), Expect = 0.0
 Identities = 617/623 (99%), Gaps = 2/623 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtaagtaaccttcacaactgggttaacaaatgtgccatttaaaaattgactttagtcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtaagtaaccttcacaactgggttaacaaatgtgccatttaaaaattgactttagtcat 260

                                                                       
Query: 61  atccgtagcacattgaaaaaatgtaaagatattgtactgtaatcacattgttttaaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atccgtagcacattgaaaaaatgtaaagatattgtactgtaatcacattgttttaaattt 320

                                                                       
Query: 121 tattatctttttaaaaaaatctgtgaatttcaaaagttgtgataagtatttattacaaaa 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattatcttttt-aaaaaatctgtgaatttcaaaagttgtgataagtatttattacaaaa 379

                                                                       
Query: 181 tccattttgtatgcttataaaagtattaaatgttttttgatataattgtttttcaaataa 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 380 tccattttgtatgcttataaaagtattaaatgttttatgatataattgtttttcaaataa 439

                                                                       
Query: 241 taaatatttggttgtcccaaagaacataaactttaagtccattttgtctctgttttgaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taaatatttggttgtcccaaagaacataaactttaagtccattttgtctctgttttgaca 499

                                                                       
Query: 301 tgaaagaataataatttgccagcaaattttaataaatgaatgataaagcatgagtaaata 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 500 tgaaagaataataatttgccagcaaattttaataaatgaataataaagcatgagtaaata 559

                                                                       
Query: 361 aatgggcaaaactaataatagtcaaatttcatcatagataatatttttagttttctaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aatgggcaaaactaataatagtcaaatttcatcatagataatatttttagttttctaatt 619

                                                                       
Query: 421 tgagatgatgatgacccagtgtacttttaatttaatagtataaacaatagttacataaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgagatgatgatgacccagtgtacttttaatttaatagtataaacaatagttacataaaa 679

                                                                       
Query: 481 aatttaaatataaaaagaaatctgaagcttattgttatcattctgtctaagctccacccc 540
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 a-tttaaatataaaaagaaatctgaagcttattgttatcattctgtctaagctccacccc 738

                                                                       
Query: 541 acagttacctggcaacagccaggtgtgcctgacccactatagaaggggctgcttaacccc 600
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 739 acagttacctggcaacagccaggtgtgcctgacccactatagaagcggctgcttaccccc 798

                                  
Query: 601 tccttctctcctgttcctcttct 623
           |||||||||||||||||||||||
Sbjct: 799 tccttctctcctgttcctcttct 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)