BAC Information

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BAC

Clone NameMSMg01-117K17
Chromosome3 (Build37)
Map Location 75,849,501 - 75,849,799
singlet/doubletsinglet
Overlap genenone
Upstream geneBC050789, Serpini2, Wdr49, Pdcd10, Serpini1, Golph4
Downstream geneFstl5, LOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117K17.T7 (MSMg01no117_k17.b1)MSMg01-117K17.TJ (MSMg01no117_k17.g1)
ACCAG328740AG328741
length707711
length of high quality
(start - end)
299 (69 - 367)306 (73 - 378)
definitionCHROMAT_FILE: MSMg01no117_k17.b1 PHD_FILE: MSMg01no117_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:18 2005CHROMAT_FILE: MSMg01no117_k17.g1 PHD_FILE: MSMg01no117_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATAATTTGCGGCGCTAAACGACTCCTATATTCAGAGAAGGCGCGGAAT
TCTTTACAGTTTCTTAAACACCGATTAAGTGGATTGTATAATGTGATTCT
TATTCTATTACTGTGGGGCAAAGTTTTAGTTGATCATGTAATGCTGCTAT
GCCAAACAAATGGTTAAATCCCATTTTACTCCATTGGTTCACAGCTTTGT
GCATTGGTAAGTTTGATTTCTTACTATTTGGTAAAAGAAAATTGTATTTG
TATTCATGAAAGATATCTGCCCCTGTCATCTTTGAAAGAGGAGGGGCTGA
TTTCATAATGAACTTCATATTGTGCTAGTTAGGTTTGTCCATAAATACTT
TTTGTCATCTTAACAATTGCGCAAAAGCCAGTGGTGCAACCTCCTTAGTC
TCAAGTCTGCATTGTGAGGATATTTTGAGTTCGAATCCAACTATAAATAT
AATTCTAGAAATATTATCTGTGCTTAGTCATCATTATATTTTTCAGCCAA
CTTTCTCCTTCTCTTTCAACCCTTTTATTTCCCCATTATCATAAAATATT
TTCATTTTCCCTTCTTCATCTGACAATTTAAAGCTAAGCATCTTGATAGA
TCAAAATAATCTCAAGCCGATGCATTTGTCCTTATGGACACCTCGAGCTC
TCCTTGTACATGTCTTATTAACGCAAAAATTCGAAAGTGGTTTTTACCTA
ATTTACN
TCGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCTGAAATTCATAGAGATGATGGTAGCATGCACAGGG
CCAGAGAGGGTCTGTACTTAGGGCTGAGAGCAGAAATGGACATGTGCTAC
TACTTCTGACCCAGAAGTTACCTCAATTCACAAAGGAGAACTTTTCTATA
AGGGAGTTTCACTGTGGAACAAACCATGCTTAAGAGTAGGCTCCATGCCG
AGCAGTAGACAAAGAACAAAAAACAAACTCAGTGGCATATTTGGAAGGTC
TTTTTTTCATGTTTGTACTAGTTTGTATATACTTGGCCAGGGTGTGGCAC
TATTAGGAGGTGTAGCTACTTATTGCAGTAGGTGTGTCACTGTAGGTATG
GGCTTTAATACCCTCATGCTAGCTGCCTAGAAGCTAGTCTTCTAGTTGCC
TCCAGAACAAGACGTGGAGCTCACAGCTCCAACAGTCCCCTGTATGTCTG
GATGCTGCCATGCTCCTGCCTTTATGATAATGGACTAAACCTCTGAACCT
GTAATGCAGGCCCATTTAAAATGTTGTCCTTTGTAAGAATTGCCTTGGAT
ACGGTGTCTGTTGACAGCTGTCAAACTCTACCTAACGCAATGTTGTATCA
GGCTTTTTTTTTCCCCCCGACAAGACCTTTGTGAGAAAATAAAACGTTCC
AGGTGCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_k17.b1 MSMg01no117_k17.b1 CHROMAT_FILE:
MSMg01no117_k17.b1 PHD_FILE: MSMg01no117_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:18 2005
         (299 letters)



>mm_chr3_75849301_75849999
          Length = 699

 Score =  547 bits (283), Expect = e-160
 Identities = 295/299 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caccgattaagtggattgtataatgtgattcttattctattactgtggggcaaagtttta 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 499 caccgattaagtggattgtataatgtgattcttattctattactgtggggaaaagtttta 440

                                                                       
Query: 61  gttgatcatgtaatgctgctatgccaaacaaatggttaaatcccattttactccattggt 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gttgatcatgtaatactgctatgccaaacaaatggttaaatcccattttactccattggt 380

                                                                       
Query: 121 tcacagctttgtgcattggtaagtttgatttcttactatttggtaaaagaaaattgtatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tcacagctttgtgcattggtaagtttgatttcttactatttggtaaaagaaaattgtatt 320

                                                                       
Query: 181 tgtattcatgaaagatatctgcccctgtcatctttgaaagaggaggggctgatttcataa 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 319 tgtattcatgaaagatatctgcccctgtcatctttgaaagagcaggggctgatttcataa 260

                                                                      
Query: 241 tgaacttcatattgtgctagttaggtttgtccataaatactttttgtcatcttaacaat 299
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgaacttcataatgtgctagttaggtttgtccataaatactttttgtcatcttaacaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)