XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CACTGAGCAAATCAAATGGCTGAGAAGCACCTAAAGAAATGTTCAACAAC
CTTAGTCATTAGGGAAATGCAAATAAAAATGACCCTGAGATTTCCCCTCA
CACTAGTCAGAATCGCCAAGTTCAAAAACTCAGGTGACAGCAGATGTTGG
CAGTGATGTGAAAGAAGAGCAACAGTCCTCAATTGCTAGTGGGATTGCAA
GCAGGTACAACCACTCTGAAAATCAGTTAGGCAGTACCTCAGAAAATTGA
ATATAGTACTACCAGAGGATCCAGCTATACCATTCCTGGGCATATATCCA
AAAGTTGCTTCAACATATAACAAGGACACATGTTCCACTATGTTTATACA
GCCTAATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAAC
AGAGGAATTTATACAGAAAATATGGAACATTTACACAGTGGAGTACTACT
CAGCTATTAAAAACAAGGAATTCATGAAATTCACAGGCAAATGGATGGAA
CCTGAATATATCATCCTGAGTGAGGTAACCCAGTCACAAAGAACACACAT
GATATGCACTCGCTGATAAGTAGGTATTAGTCCAAAAGCTCAGAATATCC
AAGATACAATTCATGGCTTCAGTAAATAGAAGACCAAAGTGTGGATGTTT
TGGTTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATACCTCAAGTCTGCCAAAATATTTCC
CACTGCCAGGTCTACTCAGCCAATGATGCTGGGGAAAGCATACGGTGCTT
TTGGAAGACATAAGTCAGAATATGCTCTATTTTCTGGTGTGTATGCTCAT
ACTTCACATAAAAAGAAAAATGTGTGTGAGAGAGAAAAATAAAAGAAGTG
AGATTTTCATGTGGAGTTTAATTTCCAAGACCTTTAAAAATCCATTATAT
GTAGCAGATACCCAGAGAGAGACTATCTGGACCCTAGTGAGGAAAATAAA
TATAAACTATAGTACATTGAGTTTTTAAAAACTTTTTTTTTGTACACAGT
GAGTTTGAATAGAAAGTGACTTCCTATTGAAAATGTAAAAATGTGGAGGC
AATCCTTCAAAAGCATTTTAGAAATCCCAGCTTAGGGTAGTTTGCTGAAC
TAATGAAGTTCTTCTGATAGCTTTCTTCACAGCTAAGAAGTGAGATCCAG
AACACTTATGATGAAGCTGTATAGGTGCTCAGCCGAGAAGCCTAAAACAT
TGACAGGAAATATTGATTTATCTAGCATGCTCATTCTTCACTGCAAGCCA
GTCTTACTGAGCTTCCTCTGATATTCCAAGACCGTTATAATGTATAGATT
TATCTTCTC

Query= MSMg01no117_l12.g1 MSMg01no117_l12.g1 CHROMAT_FILE:
MSMg01no117_l12.g1 PHD_FILE: MSMg01no117_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:22 2005
         (603 letters)



>mm_chr3_47666903_47667905
          Length = 1003

 Score = 1166 bits (603), Expect = 0.0
 Identities = 603/603 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacctcaagtctgccaaaatatttcccactgccaggtctactcagccaatgatgctggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 atacctcaagtctgccaaaatatttcccactgccaggtctactcagccaatgatgctggg 744

                                                                       
Query: 61  gaaagcatacggtgcttttggaagacataagtcagaatatgctctattttctggtgtgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gaaagcatacggtgcttttggaagacataagtcagaatatgctctattttctggtgtgta 684

                                                                       
Query: 121 tgctcatacttcacataaaaagaaaaatgtgtgtgagagagaaaaataaaagaagtgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgctcatacttcacataaaaagaaaaatgtgtgtgagagagaaaaataaaagaagtgaga 624

                                                                       
Query: 181 ttttcatgtggagtttaatttccaagacctttaaaaatccattatatgtagcagataccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttttcatgtggagtttaatttccaagacctttaaaaatccattatatgtagcagataccc 564

                                                                       
Query: 241 agagagagactatctggaccctagtgaggaaaataaatataaactatagtacattgagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agagagagactatctggaccctagtgaggaaaataaatataaactatagtacattgagtt 504

                                                                       
Query: 301 tttaaaaactttttttttgtacacagtgagtttgaatagaaagtgacttcctattgaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tttaaaaactttttttttgtacacagtgagtttgaatagaaagtgacttcctattgaaaa 444

                                                                       
Query: 361 tgtaaaaatgtggaggcaatccttcaaaagcattttagaaatcccagcttagggtagttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgtaaaaatgtggaggcaatccttcaaaagcattttagaaatcccagcttagggtagttt 384

                                                                       
Query: 421 gctgaactaatgaagttcttctgatagctttcttcacagctaagaagtgagatccagaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gctgaactaatgaagttcttctgatagctttcttcacagctaagaagtgagatccagaac 324

                                                                       
Query: 481 acttatgatgaagctgtataggtgctcagccgagaagcctaaaacattgacaggaaatat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acttatgatgaagctgtataggtgctcagccgagaagcctaaaacattgacaggaaatat 264

                                                                       
Query: 541 tgatttatctagcatgctcattcttcactgcaagccagtcttactgagcttcctctgata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgatttatctagcatgctcattcttcactgcaagccagtcttactgagcttcctctgata 204

              
Query: 601 ttc 603
           |||
Sbjct: 203 ttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)