BAC Information

Click to search

BAC

Clone NameMSMg01-117M23
Chromosome3 (Build37)
Map Location 45,323,946 - 45,324,228
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC433580, LOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117M23.T7 (MSMg01no117_m23.b1)MSMg01-117M23.TJ (MSMg01no117_m23.g1)
ACCAG328843AG328844
length720721
length of high quality
(start - end)
294 (69 - 362)283 (81 - 363)
definitionCHROMAT_FILE: MSMg01no117_m23.b1 PHD_FILE: MSMg01no117_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:28 2005CHROMAT_FILE: MSMg01no117_m23.g1 PHD_FILE: MSMg01no117_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATAAAATTCTCCCGAAAACAGATGGATCTGGAGGATATCATCCTGAGTA
AGTTAACCCAGTCACAAAAGCCTGCACATGATATGCACTCACTGATAAGA
CCAGAAACTTATTAGACCAGAAACTTAGAATAACCAAGATACAATTTGCA
AAACTCATAAAAGTCAAGAAGAAAGAAGACCAAAATGTGGATACTTCGTT
CCTTCTTAGAAGGGGGAACAAAATATACATGGAAGGAGTTATAGAGACAA
AGTTCGGAGCTGAGACAGAAGATAGGACCATCCAGAGACTTCACATCCAG
AGATCCATCCTATATTCCACCCCCCCACCCAGACATTATTGCATGTCAAG
ATTTTGTTGACAGGACCTTGATATAGATGTCTCCTGTGAGGCTATGCCAG
TGCCTGGCAAATACAGAAGTGAATGCTCACAGTCATCTCTTGAATGGAAC
ACAGGGTCCCCAATGAAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGG
ATCTGAAGCCCTATAGGAGAAACAACAATTTGAACTAACCAGTACCTCCA
TAGCTCATGTCTCTAGCTGCATATGTACCAAAGGGTGTCCTAACTGGTCC
TCTATGAGCAGGAGAACCCCTTGGTCTTGCAAAGATTCTAGTCCCCAGTA
TAGGGATATGTATGCCTGCA
CATGCAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACACAAAAAAAATTTGGGAATAGAAGTGT
CTCTTTCAGACTTGTAAACAAAATTTTAAGACAGTCTAAAAATAGGTAAA
TTTATAACCCAGGGTCTAAATTCATGAGATGTGATAAATTGCAATACAAT
CCATTTTGCATCAAAACTCGGCTTGTGGCTTTAAAAGATACCTATGTGCT
CTGCTATGAATGTGTCTAACCAACTAAATTTTTGCCATGAGATCAATTAT
ATTCTCACTAGAAATGCTGGAAAGCTCTTTCTGGTTCACCCCTCATGCAG
GGTTTTGCTGTGTTGTATTTGTTTTGAATGTGCTGCACATATGTATATAT
TTTATATATGCTTCCAAAGCTATAAGAAATTTGAGGTTTTAATTTTAGTG
CAGATACATATCTTTTCAAATGTTTTTGACTATGTTTACTGTGTTTAAAA
ATCTATTTAATATCTTTTACTTATTTATTAAAACTGATATATCATCTTTA
CTGATTTATAAGCTTTTACATATATATTGTGAGTAAATTATTTTGTTTAA
TTTGCATTTTTTTTTGGTTTGCTAACTTAATTTATACCCAACAACATATT
AGTTTTTGTGGAAAGTCTAACTACATCTCAGGCAACAACAATTTATATTT
AATGCCACATGCCCCACAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_m23.g1 MSMg01no117_m23.g1 CHROMAT_FILE:
MSMg01no117_m23.g1 PHD_FILE: MSMg01no117_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:28 2005
         (283 letters)



>mm_chr3_45323746_45324428
          Length = 683

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatttgggaatagaagtgtctctttcagacttgtaaacaaaattttaagacagtctaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatttgggaatagaagtgtctctttcagacttgtaaacaaaattttaagacagtctaaa 260

                                                                       
Query: 61  aataggtaaatttataacccagggtctaaattcatgagatgtgataaattgcaatacaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataggtaaatttataacccagggtctaaattcatgagatgtgataaattgcaatacaat 320

                                                                       
Query: 121 ccattttgcatcaaaactcggcttgtggctttaaaagatacctatgtgctctgctatgaa 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccattttgcatcaaaactcagcttgtggctttaaaagatacctatgtgctctgctatgaa 380

                                                                       
Query: 181 tgtgtctaaccaactaaatttttgccatgagatcaattatattctcactagaaatgctgg 240
           ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 tgtgtctaaacaactaaatttttgccatgagatcaattgtattctcactagaaatgctgg 440

                                                      
Query: 241 aaagctctttctggttcacccctcatgcagggttttgctgtgt 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagctctttctggttcacccctcatgcagggttttgctgtgt 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)