Query= MSMg01no117_p04.b1 MSMg01no117_p04.b1 CHROMAT_FILE:
MSMg01no117_p04.b1 PHD_FILE: MSMg01no117_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:39 2005
(645 letters)
>mm_chr3_141639236_141640280
Length = 1045
Score = 1218 bits (630), Expect = 0.0
Identities = 639/642 (99%), Gaps = 1/642 (0%)
Strand = Plus / Plus
Query: 5 gaattcattttattctcgaaaa-atggtttttaatcttattcaaagctttcacctcccca 63
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcattttattctagaaaacatggtttttaatcttattcaaagctttcacctcccca 263
Query: 64 aaattcaagaaataaatcaacttcaaagcagttataaatgatacagctgttcacttccct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaattcaagaaataaatcaacttcaaagcagttataaatgatacagctgttcacttccct 323
Query: 124 attagatttcctaagctacaataaaaataattttcattttattacttttgttttacatgt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attagatttcctaagctacaataaaaataattttcattttattacttttgttttacatgt 383
Query: 184 atttgccatattttcttggagcaagaaaaatgtttgtgggatgtactaccaagaaaaatg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atttgccatattttcttggagcaagaaaaatgtttgtgggatgtactaccaagaaaaatg 443
Query: 244 ggaaaaccaggagagaaaagaagaaaatgccattccaaaaatattttaagtatagttatg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggaaaaccaggagagaaaagaagaaaatgccattccaaaaatattttaagtatagttatg 503
Query: 304 agtgaaaaagtactttagctcctctgagaacagaaattataagatttaattttcagaaat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agtgaaaaagtactttagctcctctgagaacagaaattataagatttaattttcagaaat 563
Query: 364 aagaaagaatacaaagcttaatacagttcaaacatagaattttacaaattaatttttaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aagaaagaatacaaagcttaatacagttcaaacatagaattttacaaattaatttttaaa 623
Query: 424 taaaatatgtagaataaatatagaaaaagtataatcagaccaaaaaaatcatattctatc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taaaatatgtagaataaatatagaaaaagtataatcagaccaaaaaaatcatattctatc 683
Query: 484 tttaaatgtagggatttctttcctttgtgatttacattgtaattatatacttgaaaatga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tttaaatgtagggatttctttcctttgtgatttacattgtaattatatacttgaaaatga 743
Query: 544 tgtttgtcaaggttgacaaaatttctcatacatttgcccatctttaacataaaaagcttc 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agtttgtcaaggttgacaaaatttctcatacatttgcccatctttaacataaaaagcttc 803
Query: 604 caatttagaagttaacatattttacgaattgcataccgtgca 645
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 caatttagaagttaacatattttacgaattgcataccgtgca 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_p04.g1 MSMg01no117_p04.g1 CHROMAT_FILE:
MSMg01no117_p04.g1 PHD_FILE: MSMg01no117_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:39 2005
(544 letters)
>mm_chr3_141764591_141765534
Length = 944
Score = 998 bits (516), Expect = 0.0
Identities = 534/540 (98%)
Strand = Plus / Minus
Query: 1 aataaattgaatttatttcagcctttggttactgaccagttcaagacaccatccagggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aataaattgaatttatttcagcctttggttactgaccagttcaagacaccatccagggct 681
Query: 61 gctcctaatgcctataatcttgtctctactccaaccctaacctacttactcaaaacagat 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gctcctaatgcctgtaatcttgtctctactccaaccctaacctacttactcaaaacagat 621
Query: 121 accccaaagtgctcatataccttaaatctcttcaagaacccattcctctctttcttagac 180
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 620 acccaaaagtgctcatataccttaaatcttttcaagaacccattcctctctttcttagac 561
Query: 181 tgtgcctgattttttcctatgtaagatttccccctgagcacagtaagtagccttattgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtgcctgattttttcctatgtaagatttccccctgagcacagtaagtagccttattgtc 501
Query: 241 tggcactgctaccggaatgacggacagtgctctataaacttgttttgcttgcagaaggtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tggcactgctaccggaatgacggacagtgctctataaacttgttttgcttgcagaaggtg 441
Query: 301 ctcagtacatgtttagtagacaaatagatgcttctatttcaaatgaatgtttatagacct 360
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 440 ctcagtacatgtttagtagacaaatagatgcttctatttctagtgaatgtttatagacct 381
Query: 361 ttgtacagcttacaggatgttataaatgtcttcctgctggtgaaggcaagattccccata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttgtacagcttacaggatgttataaatgtcttcctgctggtgaaggcaagattccccata 321
Query: 421 ggattaatgagcacatgtaagccctgttaacccagcagagcagatataaatttctccagt 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 320 ggattaatgagcacatgtaagccctgttaacccagcagagcagatataaatttccccagt 261
Query: 481 cagtccatggaggttaacattctcataagccgaatttctaaatttaagtaactttgattg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cagtccatggaggttaacattctcataagccgaatttctaaatttaagtaactttgattg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
