BAC Information

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BAC

Clone NameMSMg01-117P10
Chromosome3 (Build37)
Map Location 150,119,649 - 150,265,863
singlet/doubletdoublet
Overlap geneLOC100040455, LOC100040463, LOC623554
Upstream geneLOC100040620, LOC100040633
Downstream geneEltd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117P10.T7 (MSMg01no117_p10.b1)MSMg01-117P10.TJ (MSMg01no117_p10.g1)
ACCAG328960AG328961
length706707
length of high quality
(start - end)
575 (41 - 615)500 (74 - 573)
definitionCHROMAT_FILE: MSMg01no117_p10.b1 PHD_FILE: MSMg01no117_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:40 2005CHROMAT_FILE: MSMg01no117_p10.g1 PHD_FILE: MSMg01no117_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,119,649 - 150,120,219)(150,265,365 - 150,265,863)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAAGATGCACTCAGTTGGAGTGCTTCTACAACCTCAGAATCAGTTTTTCT
CCAAGACAACTGTCTTCTGGTAAGACCACTCATGAAAAGATTGTGGAGTT
TTGTCTGAAGATCTTTGGAAGAGGATCCCCAAAGATTCTTGATTATCAAG
CATAAAACATTGTGATATCTTCTGTTAGCATGCCACAATGATCGCTCATT
TTAAACATGATCACTCTGTCCTGCTTGATGAGAGATAAACACTGATTCCA
TCTGGCCTTCACTGAACACCTCAGGCCAAGTTGCTTCTGATCGTCAAACT
CTGTTCTTTCCTTTTTAAAAAATGAACAATTCTATCTCATGAAAGGGCTG
GAGATCAAGACAAGTTTAGAAGATAGCATTCTCAGCAACTACCTTGACAG
TAATAAATTCCACTTGCAATAAATTAATGGTGATAGCATCTATTATAAAT
TAAATAAAGAACACTAATCTTCATGTAAAAAACATTCAAAATAATGTAAT
TAGATATTCAATTAAAGACATAGTCAGCTATTCACACTATAACTGGACAT
ATAGAATTCCCTTCCCAAAGCTATGTTCTGGNAAAATTAAATCAGATCTG
GGATAAACTACATTAACAATCCTTACCTTCCAGTATGTTCCTGCTTTATG
CAAGAT
NCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTTGAGTTGTAGTTAACAGCAACCTG
TGTGTGCTTCCCAAGGTGCAGTGGCATGAGAACATCTTGTAGGATGAAAA
TTGCTGCAATGGTATGAACTAAGGAAATAAATTATATTTCTACATAGACA
TTGAGTATTTGATAACTTACTGAATTTCTAGAAGTTATGGATTACTATTT
CCTTGTCCCAACCTACATTGTTAACAGCTCTTCATGGAAACATTGGTCTC
TGGGAGTAGCCTAGACACACATTATCTCATGTGTTGAGTGTTGAGGAACA
GTCAGACACAGCCTGAAGGAATGGGATATGAAAATACTGACTGTACCAAA
TAGGCCAGCATGGCAATCAAAGTAAAATACCATTAAAATTGAAAAAATGT
CATTTAAAAAAAATGTGGTACAGCACAGCCATGTTTCCTTGTTTGACAGA
TTCACTAATCTGTTCATTCATGTTTTGATAGATATACAGTAGAGTCATCA
CAACTATGCAGTAAAATTTTAGCATAATCCAATAAATATGATTGCTTTTT
CCATGATCAAAAATGATTTACTATTTCTGTGAGGTTATAAATGATTGCTG
AAATACTAAACATTGAAGAGAACCATTCACAAGCATTTCATTCTTTTCAT
TAATTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_p10.b1 MSMg01no117_p10.b1 CHROMAT_FILE:
MSMg01no117_p10.b1 PHD_FILE: MSMg01no117_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:40 2005
         (575 letters)



>mm_chr3_150119445_150120419
          Length = 975

 Score = 1058 bits (547), Expect = 0.0
 Identities = 565/571 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaagatgcactcagttggagtgcttctacaacctcagaatcagtttttctccaa 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagatgcattcagttggagtgcttctacaacctcagaatcagtttttctccaa 264

                                                                       
Query: 65  gacaactgtcttctggtaagaccactcatgaaaagattgtggagttttgtctgaagatct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gacaactgtcttctggtaagaccactcatgaaaagattgtggagttttgtctgaagatct 324

                                                                       
Query: 125 ttggaagaggatccccaaagattcttgattatcaagcataaaacattgtgatatcttctg 184
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgggaagaggatccccaaagattcttgattatcaagcataaaacattgtgatatcttctg 384

                                                                       
Query: 185 ttagcatgccacaatgatcgctcattttaaacatgatcactctgtcctgcttgatgagag 244
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 ttagcatgccacaatgatcgctcattttaaacatgatcactctgttctgcttgatgagag 444

                                                                       
Query: 245 ataaacactgattccatctggccttcactgaacacctcaggccaagttgcttctgatcgt 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 445 ataaacactgattccatctggccttcactgaacacctcaggccaagttgcttctgatctt 504

                                                                       
Query: 305 caaactctgttctttcctttttaaaaaatgaacaattctatctcatgaaagggctggaga 364
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 505 caaactctgttctttcctttttaaaaaatgaacaattctatcccatgaaagggctggaga 564

                                                                       
Query: 365 tcaagacaagtttagaagatagcattctcagcaactaccttgacagtaataaattccact 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcaagacaagtttagaagatagcattctcagcaactaccttgacagtaataaattccact 624

                                                                       
Query: 425 tgcaataaattaatggtgatagcatctattataaattaaataaagaacactaatcttcat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgcaataaattaatggtgatagcatctattataaattaaataaagaacactaatcttcat 684

                                                                       
Query: 485 gtaaaaaacattcaaaataatgtaattagatattcaattaaagacatagtcagctattca 544
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 685 gtaaaaaacattcaaaataatgtaattagatgttcaattaaagacatagtcagctattca 744

                                          
Query: 545 cactataactggacatatagaattcccttcc 575
           |||||||||||||||||||||||||||||||
Sbjct: 745 cactataactggacatatagaattcccttcc 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no117_p10.g1 MSMg01no117_p10.g1 CHROMAT_FILE:
MSMg01no117_p10.g1 PHD_FILE: MSMg01no117_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:40 2005
         (500 letters)



>mm_chr3_150265165_150266064
          Length = 900

 Score =  919 bits (475), Expect = 0.0
 Identities = 493/499 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttgagttgtagttaacagcaacctgtgtgtgcttcccaaggtgcagtggcatgagaac 60
           ||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||
Sbjct: 699 tgttgagttgtagttaacagcaacctgtgtgtgtttcccaaggtgcaatgacatgagaac 640

                                                                       
Query: 61  atcttgtaggatgaaaattgctgcaatggtatgaactaaggaaataaattatatttctac 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 639 atcttgtaggatgaaaattgctgcaatgatatgaactaaggaaataaattatatttctac 580

                                                                       
Query: 121 atagacattgagtatttgataacttactgaatttctagaagttatggattactatttcct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 579 atagacattgagtatttgataacttactgaatttctagaagttatggattactatttcat 520

                                                                       
Query: 181 tgtcccaacctacattgttaacagctcttcatggaaacattggtctctgggagtagccta 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tgtcccaacctacgttgttaacagctcttcatggaaacattggtctctgggagtagccta 460

                                                                       
Query: 241 gacacacattatctcatgtgttgagtgttgaggaacagtcagacacagcctgaaggaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gacacacattatctcatgtgttgagtgttgaggaacagtcagacacagcctgaaggaatg 400

                                                                       
Query: 301 ggatatgaaaatactgactgtaccaaataggccagcatggcaatcaaagtaaaataccat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ggatatgaaaatactgactgtaccaaataggccagcatggcaatcaaagtaaaataccat 340

                                                                       
Query: 361 taaaattgaaaaaatgtcatttaaaaaaaatgtggtacagcacagccatgtttccttgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 taaaattgaaaaaatgtcatttaaaaaaaatgtggtacagcacagccatgtttccttgtt 280

                                                                       
Query: 421 tgacagattcactaatctgttcattcatgttttgatagatatacagtagagtcatcacaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tgacagattcactaatctgttcattcatgttttgatagatatacagtagagtcatcacaa 220

                              
Query: 481 ctatgcagtaaaattttag 499
           |||||||||||||||||||
Sbjct: 219 ctatgcagtaaaattttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)