BAC Information

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BAC

Clone NameMSMg01-118F04
Chromosome3 (Build37)
Map Location 51,780,614 - 51,905,325
singlet/doubletdoublet
Overlap genenone
Upstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3
Downstream geneLOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832, Cog6, Lhfp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118F04.T7 (MSMg01no118_f04.b1)MSMg01-118F04.TJ (MSMg01no118_f04.g1)
ACCAG329226AG329227
length713736
length of high quality
(start - end)
314 (47 - 360)268 (73 - 340)
definitionCHROMAT_FILE: MSMg01no118_f04.b1 PHD_FILE: MSMg01no118_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:08 2005CHROMAT_FILE: MSMg01no118_f04.g1 PHD_FILE: MSMg01no118_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,905,016 - 51,905,325)(51,780,614 - 51,780,879)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCACAAATGCGCGGAA
TTCCTAGGAGGGAGCTCGCCCAAGACAGTGGTTAACTTCAAAATGAAAAT
ATAATGCTTATTTGAATAGATGAAGACAACAGCTATAAATTTCTCAATGA
ATTCTACTTCGGCAAGTTAATAACAAACTTGAAAAACGATTGCCTGAAAA
TCAATTTTTTTCTACCAGTTTTCAATAATTTAGCTTATTGACTTATAGAA
ATACCAAACCCGTGTGCAAAACAGTATATTCTAGCTTCTGCCGAATCACA
GGCACCTCACAGATGCCAGTGTGAACAATGTGTGACGCGTGGGATGAAAA
TAAACCGCTTCAACCCTAAGCAACCACGTGTGTGTAGAGTCTGTGTACCG
AGACAGACATTAACATAGCCCTCCTTTATGGCCTACATTTTCCTGGAAAA
CAACTAGTTCCCCAACTCCCATCCCCCTCTGAGATGCACCACCACTTTAA
GCTTATCCTATGCATGAGATCTACCAACCAAAACCTCCCGATGGGTTATT
ACCACCCCCGTTCCTCTTCCTTTTCCCGAACCGACCGCTGGACCACAGCG
CCATTCTGTTGGGGCCCCCCCCCATTAAATTTATTTCCCCCATCGTACTC
CCCATTTGCTACACCCCCAACGAACCCCCGTGACCTCCTACCGTCCCATA
CTCCCATGCTCCT
CGATGCAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTCTTCTCTTCCAGCTTGTTTATAGC
TCAACCTCCTAACCAACTTGGGTCCATGTTGCTTTCTGTTGAGTGACCTG
ATTTCACCCTTAGACCTCCTGCACTGACCTCAGCTTCCCTCACCAGCCAG
TATCTTTCTCAGGGACTGGGTATTTTGTCTTGGTCTTGAAAATTCCTCTC
AATTAATACTTTGATCAGCTACATGCTAAAAGATCTTGAAGCACTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCCCCCCCTCCC
ATTCCCTTCCTTTCTTCTCCCACTTTCTCTTCTACTCTTTTTTTCCCTCC
TTCTCCCCTTCTTCCCTCCCTCCTTCATCCAACTTCCGTTCCTTTTCCTT
TTACTTCCCTTCTTCTTCTGACATTTTCCGCTAACTCCCATTTTTCCCCT
CCTCTTTCCATCTCCCATTTATATTCCCCTTCTCCCCTTTTCTCTTCTCC
CCCCTCCCCCCCCCTCCACCTTTTTCTTTTTCCCCCCTCCCCCCCTTTCC
CCTTTTCCTTTTCCCCCCCCCCACACCTCCCTACATCATATATCCCCCCC
CCTTTATTTTACTTTCTTACTTAACACTATTATATATTTTATCCACCTCC
TTCCCTTTCTTTCCTTCCCTCACCCTTCCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_f04.b1 MSMg01no118_f04.b1 CHROMAT_FILE:
MSMg01no118_f04.b1 PHD_FILE: MSMg01no118_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:08 2005
         (314 letters)



>mm_chr3_51904815_51905528
          Length = 714

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaattcctaggagggagctcgcccaagacagtggttaacttcaaaatgaaaatataatgc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaattcctaggagggagctcgcccaagacagtggttaacttcaaaatgaaaatataatgc 452

                                                                       
Query: 62  ttatttgaatagatgaagacaacagctataaatttctcaatgaattctacttcggcaagt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ttatttgaatagatgaagacaacagctataaatttctcaatgaattctacttcggcaagt 392

                                                                       
Query: 122 taataacaaacttgaaaaacgattgcctgaaaatcaatttttttctaccagttttcaata 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 taataacaaacttgaaaaacgattgcctgaaaatcaatttttttctaccagttttcaata 332

                                                                       
Query: 182 atttagcttattgacttatagaaataccaaacccgtgtgcaaaacagtatattctagctt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 atttagcttattgacttatagaaataccaaacccgtgtgcaaaacagtatattctagctt 272

                                                                       
Query: 242 ctgccgaatcacaggcacctcacagatgccagtgtgaacaatgtgtgacgcgtgggatga 301
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 271 ctgccgaatcacaggcacctcacagatgccagtgtgaagaatgtgtgacgcgtgggatga 212

                     
Query: 302 aaataaaccg 311
           ||||||||||
Sbjct: 211 aaataaaccg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no118_f04.g1 MSMg01no118_f04.g1 CHROMAT_FILE:
MSMg01no118_f04.g1 PHD_FILE: MSMg01no118_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:08 2005
         (268 letters)



>mm_chr3_51780414_51781081
          Length = 668

 Score =  507 bits (262), Expect = e-148
 Identities = 265/266 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttcttctcttccagcttgtttatagctcaacctcctaaccaacttgggtccatgttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttcttctcttccagcttgtttatagctcaacctcctaaccaacttgggtccatgttgc 260

                                                                       
Query: 61  tttctgttgagtgacctgatttcacccttagacctcctgcactgacctcagcttccctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctgttgagtgacctgatttcacccttagacctcctgcactgacctcagcttccctca 320

                                                                       
Query: 121 ccagccagtatctttctcagggactgggtattttgtcttggtcttgaaaattcctctcaa 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 ccagccagtatctttctcagggactgggtattttgccttggtcttgaaaattcctctcaa 380

                                                                       
Query: 181 ttaatactttgatcagctacatgctaaaagatcttgaagcactgtgtgtgtgtgtgtgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaatactttgatcagctacatgctaaaagatcttgaagcactgtgtgtgtgtgtgtgtg 440

                                     
Query: 241 tgtgtgtgtgtgtgtgtgtgtgtgtg 266
           ||||||||||||||||||||||||||
Sbjct: 441 tgtgtgtgtgtgtgtgtgtgtgtgtg 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)