Query= MSMg01no118_f24.b1 MSMg01no118_f24.b1 CHROMAT_FILE:
MSMg01no118_f24.b1 PHD_FILE: MSMg01no118_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:12 2005
(540 letters)
>mm_chr3_17744687_17745627
Length = 941
Score = 839 bits (434), Expect = 0.0
Identities = 460/472 (97%), Gaps = 7/472 (1%)
Strand = Plus / Minus
Query: 3 ggaattccatgtgagtcccc----agctattctgaagttgccagaagataacgtagagaa 58
||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 469 ggaattccatgtgag---ccataaagctattctgaagttgccagaagataacgtagagaa 413
Query: 59 atcagtattcatgtacattgtcaactatcttcgtgttcaagtcttcctagcacagaaact 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 atcagtattcatgtacattgtcaactatcttcgtgttcaagtcttcctagcacagaaact 353
Query: 119 gcatttcagcgaactaggtttgagatcactatagcccctcagacatcactttggctcttt 178
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 352 gcatttcagcgaactaggtttgagatgactatagcccctcagacatcactttggctcttt 293
Query: 179 atactctgtatccaaattatccctacagttcattatcctagttatacatccacagactct 238
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 292 atactctgtatccaaattatccctacagttctttatcctagttatacatccacagattct 233
Query: 239 ggaagcataacagaaaccactatttttagctgccctgacctgcaggactaaacagcaagg 298
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 232 ggaagcataacagaaaccactgtttttagctgccccgacctgcaggactaaacagcaagg 173
Query: 299 gtttctagggagggagtgagaatggaagggaaaggagacacaaaaaaaggagacaagaca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 gtttctagggagggagtgagaatggaagggaaaggagacacaaaaaaaggagacaagaca 113
Query: 359 aaaatctgatcaagtctcatttactcttgggaaacagagggcttataaagctacaaacca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 aaaatctgatcaagtctcatttactcttgggaaacagagggcttataaagctacaaacca 53
Query: 419 caaatggtatttgcccaggtgcacaggctaaacctgttttatcacttggtaa 470
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 caaatggtatttgcccaggtgcacaggctaaacctgttttatcacttggtaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 941
Length adjustment: 10
Effective length of query: 530
Effective length of database: 931
Effective search space: 493430
Effective search space used: 493430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_f24.g1 MSMg01no118_f24.g1 CHROMAT_FILE:
MSMg01no118_f24.g1 PHD_FILE: MSMg01no118_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:12 2005
(449 letters)
>mm_chr3_17591691_17592543
Length = 853
Score = 826 bits (427), Expect = 0.0
Identities = 445/453 (98%), Gaps = 4/453 (0%)
Strand = Plus / Plus
Query: 1 ataacacctgaagaaaagtattagtaaattggtggattagatcctgtaggaaaaaaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataacacctgaagaaaagtattagtaaattggtggattagatcctgtaggaaaaaaaaaa 260
Query: 61 aaa----ctgagtttgagaacaaatataagaatctttgccagtcttttcatttgtgaatt 116
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaaactgagtttgagaacaaatataagaatctttgccagtcttttcatttgtgaatt 320
Query: 117 taactcaatgaaagaaggtgtgccttgtaaaacaaagccctggtttcagaacctggcact 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taactcaatgaaagaaggtgtgccttgtaaaacaaagccctggtttcagaacctggcact 380
Query: 177 aaaaagataaaattttcactaaagagagttgttgaaagcaaaaagaaaataattaccatg 236
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaagataaaattttcgctaaagagagttgttgaaagcaaaaagaaaataattaccatg 440
Query: 237 atatattaaaggcaaaatatattttaaaagcacaagaagccaatgtggtggcacaaacct 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatattaaaggcaaaatatattttaaaagcacaagaagccaatgtggtggcacaaacct 500
Query: 297 ttaatctttttccccattttttattagatattttctttatttacatttcaaatgttatct 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 ttaatctttttccccattttttattagatattttctttatttacatttcaaatgctatct 560
Query: 357 ggaaagtaccctataccctccccctccccccgccctacccacctactcccacttcttggc 416
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaaagtcccctataccctccccctccccccgccctacccacctactcccacttcttggc 620
Query: 417 cctggcattcccctgtactgtatcatataaagt 449
||||||||||||||||||||||||| |||||||
Sbjct: 621 cctggcattcccctgtactgtatcacataaagt 653
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 853
Length adjustment: 10
Effective length of query: 439
Effective length of database: 843
Effective search space: 370077
Effective search space used: 370077
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
