BAC Information

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BAC

Clone NameMSMg01-118I12
Chromosome3 (Build37)
Map Location 97,920,049 - 97,920,331
singlet/doubletsinglet
Overlap geneNotch2
Upstream geneAcp6, Bcl9, Olfr1402, Chd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975
Downstream geneAdam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118I12.T7 (MSMg01no118_i12.b1)MSMg01-118I12.TJ (MSMg01no118_i12.g1)
ACCAG329379AG329380
length696704
length of high quality
(start - end)
345 (62 - 406)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no118_i12.b1 PHD_FILE: MSMg01no118_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:24 2005CHROMAT_FILE: MSMg01no118_i12.g1 PHD_FILE: MSMg01no118_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGA
TTTCCATGTGTACACAGGCTGGTTGATTTTTGAAACTTCAATGATGTTTG
AACATGTTTCAACATGCAGTTGAATGTTGCCATTCCAGAGATGACGTGTC
TATCACACACACACACACAAAGACTTTTTTATTAAAGCATTTTAAATGCC
ACATTCTACAGATCTCTGAAATGTTGTTGGAGGACCACCCATCTATCTAA
AATACACTTGAATAAGCAAACTGCTTTTTTCTAGTTACTTACTTTGAAAA
CACATCTAGGGTTCTAATATGGCTTGTTCCTGTGATTAATTATATCAGTT
CTTCTAGATAAATATTATTATGAACCTGAGTATATCTTAGGAATTTATAA
ATCTTGACTAAAGACAAAGAATCTAGATAAATATACATCATTAGTTATCT
AAATTTTCTAGCACCTTGGCGTTGAACAATTAGCAAAGACTTGAGTTGTT
AGACATACATCTTAAATTAGCTTTTGTTAATCTGAGTAGATCTTCATAAC
AATTTATCCTAAGTGGTCTCTAGCACCCCAACAAGCCAGTCCTTGCCCCT
TAGACTTAACACCTGGTACTACCTAGACCTAAAATCTGACAGGTAAAAAA
GCTTTTGGGAAGGTCTTAACGTAACAAAACCCTAGTTCTCCACCCA
CGATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTATTCTAAGGCAGGAAGCACCCACT
AGCAGGCAGCTATTAGCACCTGGTGATAGCAGTAGAGATTGCCTGGCAAC
AGAGATGCAGGTATACAATGTATAGAGCCGGCCCCAGTGATAACAGGGGA
GGAAGCAGCCAGCAGAGAAACTGAGTTCACTGGGTGCTAGACAGGACTTA
GAGTGTGCTTCCCACTTAGTCCGCAGAAATCCTCCCTGAGGACAGGCTAG
GGAAGTCTCAGATAAACGAGCTGCCCACGGTCACCGGATTAGCTGCAGTG
GGCCAATATTGTAAGGAGCAGGCGTGGTCATGTGCATATCAGATACCCTG
CACATCAGATATTTACATTAGGACTCATAACAGTAGCAAAATCGCAGTTA
CAAAGTAGCAATGGAAATAATTTTATGGTTGGGGTCACCTCAGCATGAGA
AACTAACTGTACTAAAGGGTCATGGCACCACCAAGCTCGAACCTCTCAGT
TGCTGCTGTAGCCTGGGATTCTGAGCACACCTGTGTTTGCAGTCTTGGGA
CGCCATCTTTTTCCTCGGTTGAATCTTTATCACAGATTGTCATTTGTTTT
CCAGGCAAGACCTGTCTTACAGTGTTGGTTCCCTGTTCCTCAAACCCTGG
AGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_i12.g1 MSMg01no118_i12.g1 CHROMAT_FILE:
MSMg01no118_i12.g1 PHD_FILE: MSMg01no118_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:25 2005
         (288 letters)



>mm_chr3_97919840_97920531
          Length = 692

 Score =  460 bits (238), Expect = e-134
 Identities = 273/292 (93%), Gaps = 13/292 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtattctaaggcaggaagcacccactagcaggcagctattagcacctggtgatagcagt 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 210 agtattctaaggcaggaagcacccactagcaggcagctgttagcacctggtgatagcagt 269

                                                                       
Query: 61  agagattgcctggcaacagagatgcaggtatacaatgtatagagccggccccagtgataa 120
           |||||||||||||||||||||||||||         ||||||||||||||||||||||| 
Sbjct: 270 agagattgcctggcaacagagatgcag---------gtatagagccggccccagtgatag 320

                                                                       
Query: 121 caggggaggaagcagccagcagagaaactgagttcactgggtgctagacaggacttagag 180
           ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 321 caggggaggaagcagccagcagagagactgagttcactaggtgctagacaggacttagag 380

                                                                       
Query: 181 tgtgcttcccacttagtccgcagaaatcctccctgaggacaggctagggaagtctcag-- 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 381 tgtgcttcccacttagtccgcagaaatcctccctgaggacaggctagggaagtctcaggg 440

                                                               
Query: 239 --ataaacgagctgcccacggtcaccggattagctgcagtgggccaatattg 288
             ||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 agataaatgagctgcccacggtcaccagattagctgcagtgggccaatattg 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 692
Length adjustment: 9
Effective length of query: 279
Effective length of database: 683
Effective search space:   190557
Effective search space used:   190557
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)