BAC Information

Click to search

BAC

Clone NameMSMg01-118L22
Chromosome3 (Build37)
Map Location 37,300,462 - 37,457,951
singlet/doubletdoublet
Overlap geneFgf2, Nudt6, Spata5
Upstream geneAnxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, LOC100040649
Downstream geneLOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118L22.T7 (MSMg01no118_l22.b1)MSMg01-118L22.TJ (MSMg01no118_l22.g1)
ACCAG329541AG329542
length733729
length of high quality
(start - end)
516 (42 - 557)344 (71 - 414)
definitionCHROMAT_FILE: MSMg01no118_l22.b1 PHD_FILE: MSMg01no118_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:41 2005CHROMAT_FILE: MSMg01no118_l22.g1 PHD_FILE: MSMg01no118_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,457,439 - 37,457,951)(37,300,462 - 37,300,805)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAATCCGCGGAATTC
TATGAACACTGTACAGCCAGCATGTCTCTTAGGGGAGAAGAAGAGCTACT
CTACTCACCTGAACTAAATTAAGAAAACTTTTAAGAGAAGTCACTGTGTT
ACATTCATGGAAAACGAAACAGAAGGGCCACCTCAAACTGTGTGGAATGC
AGATGGGAGAGTAAGCCACCAATGCCTGTTTAGAATGTGCAGTGAAATAA
CTAACATGAGAAACATGGAGTGGTGGCAAGGGGGAACAATACTGATGATA
GTTAGGCTCGTGATAGAACCACCATGATGTGAAAGGTGCTGAGGAGTCTG
AAGGGCCCAGGGCTTTCATCAACTTCCCAATAAACCAGCAAGAAGTTATC
TCCCAATAAAACCGAAATTGATAAATGAAAACCGACAAACTAAATTTTAA
TTGGTTTGAACAGACTGCCCTAAATCATACAAAAGTTAAATGGCAGCTCT
GGGCTTAGATGCCCAACTACAGTGACTATTCTCTACTTAGTCCATCAGAC
AGCCCTGATTTAGATGACAAGGCAGGTGCTGGCTGCTGAGCACCATCACA
CTTTATGGCCTGAACTTAAGGACCATTATGATGCGCAGGTGGTATTCTTG
CATAGTTGCTCTTTTGCAACACTGAACTAGCTAAGGATAGACTACCCTTC
AAGGGGTCAAAATCAGCCTGACAGCACTGAACA
TGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACAGAATTGTAGATTTAAACAAAATAGTAT
CTAGTGAGTTTAACTGTAGGTCTTGGTTTCAATACCAAACGACTGTGAAG
GTAGAGCATGTACGGGAAAGTACTGATGAGCCCCCTCTGTGAAGGGGTCG
CCCACCTGTGGTTTCCTATCTGAGGCTACAGAATTGTGTCACCCTGGATG
GGATTGAAGTAGGACTCAAATGGTGCTTTTGTTGGCCCATGTAGTGAATG
CTGAGCGGCTGTGTTTTAATTCATCCAAAGCGTATTTCACACACAAAACA
ATTTCTGAGTTGAGGAGTCTTAACAGTGACATGAGTTCTACAGTGTAGAA
AAGTAGGGAGGTAGCGCTTTGGGGCTCAGTTTTGCAGTCTACACTGACCA
AATTTGTCAGAAACAGAGAGCTAACGAAAAAGCTGCATCTTTGTAAGGAG
ATAACATGCTAGCCCGGATTGAATGCAGAGTAAGGCCAAGAAAGAATTAC
TGCTCTTGGAAGCCATTCCCAGCAATTCTCTGCAGTCTTTTTATAAGATT
GAGACCACGCTGGTTTTTAAATTTTTCCCATTTGTGCGTTTTATTTAGCT
CTAAAATGCTCAACATGGATACTTTCATCACATCTTGTTTTACTTCTCAC
AATCGTTGTGACCAAATGCTTTTTGAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_l22.b1 MSMg01no118_l22.b1 CHROMAT_FILE:
MSMg01no118_l22.b1 PHD_FILE: MSMg01no118_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:41 2005
         (516 letters)



>mm_chr3_37457236_37458151
          Length = 916

 Score =  961 bits (497), Expect = 0.0
 Identities = 509/513 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctatgaacactgtacagccagcatgtctcttaggggagaagaagagctactctac 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gaattctatgaacactgtatagccagcatgtctcttaggggagaagaagagctactctac 657

                                                                       
Query: 64  tcacctgaactaaattaagaaaacttttaagagaagtcactgtgttacattcatggaaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tcacctgaactaaattaagaaaacttttaagagaagtcactgtgttacattcatggaaaa 597

                                                                       
Query: 124 cgaaacagaagggccacctcaaactgtgtggaatgcagatgggagagtaagccaccaatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 cgaaacagaagggccacctcaaactgtgtggaatgcagatgggagagtaagccaccaatg 537

                                                                       
Query: 184 cctgtttagaatgtgcagtgaaataactaacatgagaaacatggagtggtggcaaggggg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 cctgtttagaatgtgcagtgaaataactaacatgagaaacatggagtggtggcaaggggg 477

                                                                       
Query: 244 aacaatactgatgatagttaggctcgtgatagaaccaccatgatgtgaaaggtgctgagg 303
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 476 aacaatactgatgatagttaggctcgtgatagaaccaccacgatgtgaaaggtgctgagg 417

                                                                       
Query: 304 agtctgaagggcccagggctttcatcaacttcccaataaaccagcaagaagttatctccc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 agtctgaagggcccagggctttcatcaacttcccaataaaccagcaagaagttatctccc 357

                                                                       
Query: 364 aataaaaccgaaattgataaatgaaaaccgacaaactaaattttaattggtttgaacaga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aataaaaccgaaattgataaatgaaaaccgacaaactaaattttaattggtttgaacaga 297

                                                                       
Query: 424 ctgccctaaatcatacaaaagttaaatggcagctctgggcttagatgcccaactacagtg 483
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 296 ctgccctaaatcatacaaaagttaaatggcagctctgggtttagatgcccaactacagtg 237

                                            
Query: 484 actattctctacttagtccatcagacagccctg 516
           |||||||||||||||||||| ||||||||||||
Sbjct: 236 actattctctacttagtccaccagacagccctg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no118_l22.g1 MSMg01no118_l22.g1 CHROMAT_FILE:
MSMg01no118_l22.g1 PHD_FILE: MSMg01no118_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:41 2005
         (344 letters)



>mm_chr3_37300262_37301005
          Length = 744

 Score =  665 bits (344), Expect = 0.0
 Identities = 344/344 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagaattgtagatttaaacaaaatagtatctagtgagtttaactgtaggtcttggtttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagaattgtagatttaaacaaaatagtatctagtgagtttaactgtaggtcttggtttc 260

                                                                       
Query: 61  aataccaaacgactgtgaaggtagagcatgtacgggaaagtactgatgagccccctctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataccaaacgactgtgaaggtagagcatgtacgggaaagtactgatgagccccctctgt 320

                                                                       
Query: 121 gaaggggtcgcccacctgtggtttcctatctgaggctacagaattgtgtcaccctggatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaggggtcgcccacctgtggtttcctatctgaggctacagaattgtgtcaccctggatg 380

                                                                       
Query: 181 ggattgaagtaggactcaaatggtgcttttgttggcccatgtagtgaatgctgagcggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggattgaagtaggactcaaatggtgcttttgttggcccatgtagtgaatgctgagcggct 440

                                                                       
Query: 241 gtgttttaattcatccaaagcgtatttcacacacaaaacaatttctgagttgaggagtct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgttttaattcatccaaagcgtatttcacacacaaaacaatttctgagttgaggagtct 500

                                                       
Query: 301 taacagtgacatgagttctacagtgtagaaaagtagggaggtag 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taacagtgacatgagttctacagtgtagaaaagtagggaggtag 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)