BAC Information

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BAC

Clone NameMSMg01-118N19
Chromosome3 (Build37)
Map Location 96,792,866 - 96,793,113
singlet/doubletsinglet
Overlap genenone
Upstream genePlekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8
Downstream gene9230114J08Rik, Gja5, Acp6, Bcl9, Olfr1402, Chd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118N19.T7 (MSMg01no118_n19.b1)MSMg01-118N19.TJ (MSMg01no118_n19.g1)
ACCAG329626AG329627
length739720
length of high quality
(start - end)
249 (79 - 327)297 (69 - 365)
definitionCHROMAT_FILE: MSMg01no118_n19.b1 PHD_FILE: MSMg01no118_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:50 2005CHROMAT_FILE: MSMg01no118_n19.g1 PHD_FILE: MSMg01no118_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACTCNTCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAACGA
AGCCGCGGAATTCCTTAGATTCCTACATAAGGCATACCTACTAAGTGAGA
GGAAGTTAGTTGGCTTATAAAGGAAAAGACCCCGTACTCTGGTTCAGTGA
CAGCTCCTCCTTCCCCCAGTCAACGCATAGGTGACTCGCCGCCACTGGGC
TTGATGGCAGCCTTAGAGATTCTCTTTGCTGCTTCTTCACAAGGCAGAGT
GAGCTTTGGACATCCCTGTCTCTTGCATGTGAGTTATTTGTGATAACTTT
CTGGAGCCAACATGATAGATCTTTCCTTTCTCTGTATCTTGCATGTGAGT
TATTTGAGATAACGTTTTGTTTTCGCCGCCACCCATCTTTCCCAGAAATT
TCTGCTTTGAGAATTTTAACCCCCACCCTTCTGAGTAATGTTGTATATTA
CCCACTTGTCTTCACAGGAATTCCAAGCGGAGGAGGCTATATATTGTTCT
AATTACTCAGGGATAATAGCCCCACGCAACGAAGTCCTATCTTGAAGATC
TGAGTCTCATATCATGAGCCATACACATTTCTGCCCTTATTACCCCTGCG
CTGATTTTCCACACCTCTTTGCTCTTTTGTTAGAGGTCTGCCTCCCCCCT
CGACTTTATCCTTGTCCGTCCCCCATATCCTTCCTCCCTCTACTGCTTTT
TGCATTTTTTTCTTCGCACATGAAAGCATTTTCCTTCCA
AATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTGACGCGGGTAGAAAGGCCAGCTGGGATGC
CCCCAAAGTTTGGGGACTAAGACTCTATCGATCCACAGGGGCCGACCCGG
TGACCCGGTTCTCTTTGACCCGCCAGGTCCTCAATGTAGGACCCCGCGTC
CCCATTGGGCCTAATCCCGTGATCACTGACCAGCTACCCCCATCCCAACC
CGTGCAGATCATGCTCCCCAGGTCTCCTCATCCTCCTCCTTCAGGCACGG
TCTCTATGGTACCTGTTGCTCCCCCGCCTTCTCAACAACCTGGGACGGGA
GACAGGCTGCTAAATCTGGTAGAAGGAGTCTATCAAGCACTCAACCTCAC
CAGTCCTGACCAAACCCAAGAGCGCTGGTTGTGTCTGGTATCGGGACCCC
CCTACTACGAAGGGGTTGTCGTCCTATGTACCTACTCCAACCATACTTCT
GCTCTAGCTAATTGCTCCGTGGCCTCCCAACACAAGTTGACCCTGTCCGA
ACTGACCGGACAGTTATCTCTGCGTAGTAGCAGTTCTTATAACCCCTCTT
GCCCTGTGTAATATCACCCATAATACGAGTGATGCGTCCCACTATCTGGC
TGCTCCCGCCGGTACCATCTGGCTTTGTCACACCGGGTTCCCTTTCTGTC
CATCTATTACCGTACTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_n19.b1 MSMg01no118_n19.b1 CHROMAT_FILE:
MSMg01no118_n19.b1 PHD_FILE: MSMg01no118_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:50 2005
         (249 letters)



>mm_chr3_96792666_96793314
          Length = 649

 Score =  472 bits (244), Expect = e-138
 Identities = 247/248 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggcatacctactaagtgagaggaagttagttggcttataaaggaaaagaccccgtact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggcatacctactaagtgagaggaagttagttggcttataaaggaaaagaccccgtact 260

                                                                       
Query: 61  ctggttcagtgacagctcctccttcccccagtcaacgcataggtgactcgccgccactgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggttcagtgacagctcctccttcccccagtcaacgcataggtgactcgccgccactgg 320

                                                                       
Query: 121 gcttgatggcagccttagagattctctttgctgcttcttcacaaggcagagtgagctttg 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttgatggcagctttagagattctctttgctgcttcttcacaaggcagagtgagctttg 380

                                                                       
Query: 181 gacatccctgtctcttgcatgtgagttatttgtgataactttctggagccaacatgatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacatccctgtctcttgcatgtgagttatttgtgataactttctggagccaacatgatag 440

                   
Query: 241 atctttcc 248
           ||||||||
Sbjct: 441 atctttcc 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)