Query= MSMg01no118_o21.b1 MSMg01no118_o21.b1 CHROMAT_FILE:
MSMg01no118_o21.b1 PHD_FILE: MSMg01no118_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:55 2005
(643 letters)
>mm_chr3_56508377_56509423
Length = 1047
Score = 1191 bits (616), Expect = 0.0
Identities = 638/646 (98%), Gaps = 4/646 (0%)
Strand = Plus / Plus
Query: 1 agaattagcttgttagtaagtcactatatccatagatgttctcaattttaataccagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaattagcttgttagtaagtcactatatccatagatgttctcaattttaataccagaaa 260
Query: 61 tcaaatgcaggctcattgctttgctcattctctctgaaataatcttaattccctttgtaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 tcaaatgcaggctcattgctttgctcattctctctgaaataatcttaatttcctttgtaa 320
Query: 121 atagttgtcttggaatagttctgggtgaaggagggaccaataattcagaaagcaaaaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagttgtcttggaatagttctgggtgaaggagggaccaataattcagaaagcaaaaagg 380
Query: 181 aaataagaaaaatgtaaaagaaaagtttccattcagaattgtctaaattagaccacatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaataagaaaaatgtaaaagaaaagtttccattcagaattgtctaaattagaccacatca 440
Query: 241 tgtcatgcctggttctgctacttttattgctgagttctttttttttttt--ccagacata 298
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 tgtcatgcctggttctgctacttttattgctgagttcttttttttttttttccagacata 500
Query: 299 gattttcatctggaaaatggagatggttgtacattgggacccaggactgagggctcatct 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gattttcatctggaaaatggagatggttgtacattgggacccaggactgagggctcatct 560
Query: 359 ggaaaactcatggagtagctgttattaaagaagagcaaagtgattaatgttccttttttt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaaaactcatggagtagctgttattaaagaagagcaaagtgattaatgttccttttttt 620
Query: 419 -caagtagtcttttatacagttaaccttcatgcaaggcaagagaaaaaaa-tctacttac 476
|||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 621 tcaagtagtctttaatacagttagccttcatgcaaggcaagagaaaaaaaatctacttac 680
Query: 477 acgtggaaagcataagcaagtcacgcttaaagccacggacctcagcagagctatgttaga 536
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 acgtggaaagcataagcaagtcacgcttaaagccaaggacctcagcagagctatgttaga 740
Query: 537 ggaaggggtaagcaggtaaccgtgacattccttggccctcggggcaccaagtagctttac 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggaaggggtaagcaggtaaccgtgacattccttggccctcggggcaccaagtagctttac 800
Query: 597 agtgacaggggagaagtcattgggagacaccacaatgtctctgaaa 642
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agtgacaggggagaagtcattgggagacaccacaatgtctctgaaa 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1047
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1037
Effective search space: 656421
Effective search space used: 656421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_o21.g1 MSMg01no118_o21.g1 CHROMAT_FILE:
MSMg01no118_o21.g1 PHD_FILE: MSMg01no118_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:56 2005
(632 letters)
>mm_chr3_56614146_56615177
Length = 1032
Score = 994 bits (514), Expect = 0.0
Identities = 544/554 (98%), Gaps = 1/554 (0%)
Strand = Plus / Minus
Query: 79 gctcttcctcagtctcctatcaccatcttcagcctatagggggcaacaaatattcccttt 138
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1032 gctcttcctcagtctcctatcaccat-ttcagcctatagggggcaacaaatattcccttt 974
Query: 139 attattatattttatacattatcttactttattttttgagacaggatttcattggttatg 198
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 973 attattatattttatatattattttactttattttttgagacaggatttcattggttacg 914
Query: 199 tggctgtcctagaactcgcactgtagactaggctagtctccaagtcataaatcagcctgc 258
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 913 tggctgtcctagaactcgcactgtagactaggctagtttccaagtcataaatcagcctgc 854
Query: 259 ctctacttcctgagtgctggggagcccatagctaatcactgcacatttctctgcattatt 318
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 853 ctctacttcctgagtgctggggagcccataggtaatcactccacatttctctgcattatt 794
Query: 319 acacaggcttggagatttagacatttttctcaaaaaacctgagcattgatacagatttcc 378
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 793 acacaggcttggagatttggacatttttctcaaaaaacctgagcattgacacagatttcc 734
Query: 379 atccatcacctttatgtactgaaacaccactcccgactggcatctgctctgttctagtca 438
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 733 atccatcacctttatgtactgaaacaccactcccaactggcatctgctctgttctagtca 674
Query: 439 aagctttcatggtctgtatgtgggctatacctctgtgaatatttgaattaagactagatc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 aagctttcatggtctgtatgtgggctatacctctgtgaatatttgaattaagactagatc 614
Query: 499 attagtgacaatgcaaatgctgcttaattgcatctaaatatagtaagccttaattaaata 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 attagtgacaatgcaaatgctgcttaattgcatctaaatatagtaagccttaattaaata 554
Query: 559 ttgagaacttagtattctcttaggacacctaccccactcctggtggaggcttccagactc 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttgagaacttagtattctcttaggacacctaccccactcctggtggaggcttccagactc 494
Query: 619 tctgccttctgtca 632
||||||||||||||
Sbjct: 493 tctgccttctgtca 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
