BAC Information

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BAC

Clone NameMSMg01-118P19
Chromosome3 (Build37)
Map Location 106,526,929 - 106,527,533
singlet/doubletsinglet
Overlap gene4933421E11Rik
Upstream geneRap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608
Downstream geneCd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118P19.T7 (MSMg01no118_p19.b1)MSMg01-118P19.TJ (MSMg01no118_p19.g1)
ACCAG329719AG329720
length750725
length of high quality
(start - end)
237 (139 - 375)612 (69 - 680)
definitionCHROMAT_FILE: MSMg01no118_p19.b1 PHD_FILE: MSMg01no118_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:00 2005CHROMAT_FILE: MSMg01no118_p19.g1 PHD_FILE: MSMg01no118_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACGNCCAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTTTGTTTTGTCTGTGAATGATAAGAATTTCAAGTC
TCTGAAGAAAGAAATCAAAGAAGATCTCAGAAGATCGGAAAGATCTCCCA
TGTTCATGGATTGGCAGGATTAATATTGTAAATATGGCTATACTGCCACA
AGCAATCTACAGATTCAATGCAATACCCATCAAAATTCTAACTCAGTTCT
TCACTAAGTTAGAAAGGGCAATTTGCAAATTCATCTGGAATAACAAAAAA
CTTAGGATAGCAAAAACTATTCTCAACAATAAAATATCCTCAGGTAGAAT
CACCATGCCTGACCTCAAGCTGTACTATTTAGCAATTCCTGATAAAAACC
AAATCAAATTGCTCTGTACTACATAGCACCCCGTGATAAAAACCAAACCA
AACCAAACCTAATCTAATCAAACCAAACCTAATCACACATATTACACCTA
AATAACTGCCTGTTACTGCTACAGCGACCGATACCTATATCGATGCCAAT
ATAATTTTCGACCTAGAAATGACTCCTAACCCTTATGTTCCCTTGCATTT
TCCACCACCTACCTCATTTCCTCCCCTGCCCTTCCTGCATTTTCCCTCCT
CCCACGTCCCTCCCCTTATTGTCCCTTAATATGCCCCTTCCAATCACCCC
ATCCCTTCTTTTCCTCTTCCTCAACGCCTCACCACCCTTCCTTCTCCCCA

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTATTTACTCAGTTGTGTACCACAGGTAGCAT
AATAGCTCTAACGTTTGCTTTGGTCTGGTAACTATTTCATCTATTGGAGA
TTGAGTGTGCAGAAAATTTTTGGAATAGGATTGATGAGATTAAAATAGGT
TTGAGTAACTAGTGACCGTGCTGATTTAGAATGAAGATTGTATTTCAGAT
GACTTCAGAAATCCGAGGGCTTGGATAAGATGGTAGAGAATTAGATTTAA
AGAAATGGAATAAAAATTACACATACCTTATTAGGAAATTACTAAGATTT
ATTGAGAAGCTTTCTTGTCAATATTTGTGAATTAAATGAGACAAAGACAA
ATAAATGTCCAGTTAAAATTACTGCTCTCAGCATGTGGCTTCATTCACTT
GGGAAGAAAATGTTTCATTGCTGGTTGATGTCTTTGGTTGTAAAGTTTTA
TCTTTACAACTTCAGAGTAAACTTGGAGAGACATTAACACCATATAAGCT
AACTGGACTTATGCAATTGAATTGTTGAACCTTGCTTTTTATATAAAGTA
TAAATAAGATTCCTTAAGGAAAGCATGTAATTCTGTATAAGTTATTGAAA
ATATTTTAAACCCTTGTATTTTTTTTTTCAGCTAAAATGTCGATGACCGT
GGAGGTCTATATTGCTTGGCTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_p19.g1 MSMg01no118_p19.g1 CHROMAT_FILE:
MSMg01no118_p19.g1 PHD_FILE: MSMg01no118_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:00 2005
         (612 letters)



>mm_chr3_106526729_106527736
          Length = 1008

 Score = 1158 bits (599), Expect = 0.0
 Identities = 605/609 (99%), Gaps = 4/609 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatttactcagttgtgtaccacaggtagcataatagctctaacgtttgctttggtctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatttactcagttgtgtaccacaggtagcataatagctctaacgtttgctttggtctgg 260

                                                                       
Query: 61  taactatttcatctattggagattgagtgtgcagaaaatttttggaataggattgatgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taactatttcatctattggagattgagtgtgcagaaaatttttggaataggattgatgag 320

                                                                       
Query: 121 attaaaataggtttgagtaactagtgaccgtgctgatttagaatgaagattgtatttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attaaaataggtttgagtaactagtgaccgtgctgatttagaatgaagattgtatttcag 380

                                                                       
Query: 181 atgacttcagaaatccgagggcttggataagatggtagagaattagatttaaagaaatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgacttcagaaatccgagggcttggataagatggtagagaattagatttaaagaaatgg 440

                                                                       
Query: 241 aataaaaattacacataccttattaggaaattactaagatttattgagaagctttcttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataaaaattacacataccttattaggaaattactaagatttattgagaagctttcttgt 500

                                                                       
Query: 301 caatatttgtgaattaaatgagacaaagacaaataaatgtccagttaaaattactgctct 360
           ||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||
Sbjct: 501 caatatttgtgaattaaatgagacaaagacaaat----gtccagttaaaattactgctct 556

                                                                       
Query: 361 cagcatgtggcttcattcacttgggaagaaaatgtttcattgctggttgatgtctttggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cagcatgtggcttcattcacttgggaagaaaatgtttcattgctggttgatgtctttggt 616

                                                                       
Query: 421 tgtaaagttttatctttacaacttcagagtaaacttggagagacattaacaccatataag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgtaaagttttatctttacaacttcagagtaaacttggagagacattaacaccatataag 676

                                                                       
Query: 481 ctaactggacttatgcaattgaattgttgaaccttgctttttatataaagtataaataag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctaactggacttatgcaattgaattgttgaaccttgctttttatataaagtataaataag 736

                                                                       
Query: 541 attccttaaggaaagcatgtaattctgtataagttattgaaaatattttaaacccttgta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 attccttaaggaaagcatgtaattctgtataagttattgaaaatattttaaacccttgta 796

                    
Query: 601 ttttttttt 609
           |||||||||
Sbjct: 797 ttttttttt 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1008
Length adjustment: 10
Effective length of query: 602
Effective length of database: 998
Effective search space:   600796
Effective search space used:   600796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)