BAC Information

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BAC

Clone NameMSMg01-119A19
Chromosome3 (Build37)
Map Location 37,680,051 - 37,680,296
singlet/doubletsinglet
Overlap genenone
Upstream gene4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367
Downstream gene4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119A19.T7 (MSMg01no119_a19.b1)MSMg01-119A19.TJ (MSMg01no119_a19.g1)
ACCAG329767AG329768
length712711
length of high quality
(start - end)
450 (48 - 497)249 (72 - 320)
definitionCHROMAT_FILE: MSMg01no119_a19.b1 PHD_FILE: MSMg01no119_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:05 2005CHROMAT_FILE: MSMg01no119_a19.g1 PHD_FILE: MSMg01no119_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATGCGCGGA
ATTCTCACCTGAGTACCACAAATGGCTCAGAAGTACCTGAAAAAGTGTTC
AGCATCCTTAATCATCAGGGGAATGCAAATCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGCATGGATGTGGAGAAAGAGGAAAACTCCTCCATTGTTGGTGGTA
TTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCTGTTCCTCAGAA
AATTGGACATAGTACTACCGGAGGATCCAGTAATACCTCTCCTGGGCATA
TATCCAGAAGATGTTCCAACTAGTAAGAAAGACACATGCTCCACTATGTT
CATAGCAACCTTATTTATACTAGCCAGAAGCTGGAATGAACCCAGATGCC
CCTCAACAGAGGAATGGATACAAAAAATAATGTGGTACATTTACATAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAA
ATGGTCGGACCTGGACGGTATTATCCTGAGCGAGGTAATCCACTCACACA
ACATCTCAAATGATATGTACTCACTGACACCCGGATATTAGCCCACATAC
TTAGAATACCCAAGACATAAGTTATAACTTGCAAAATCATGAAACTCATG
ATGTACAACCAC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCACCCATCTGACTCTTGGTGATTAGATG
TAATGTCCTTATGTGGACAGAAAGGAAAAATTAGAGCTGATGTGAAAAGG
AATTACTCCACAAGCAAATACAGAAGCCCACAGCAACTTCCCCAGTCTAT
GATAGATTCGGGCCACAGGACAACACAAGTCACAGAGCGTTCTGGTGATG
TTGGCTGCAAGCAGCGGGTTTTATAGCCAGAAATGGAGTCATCTGAATTC
CTCTTCTTTGTATCTTACGTTCAAGGTTCGCTTTTCATTTCCTTAGAGCT
CAGAAACAGGTATGTAGAAAGTTATACTTTTACAAAAAATGTACAGTTAA
ATTGGTTCTCTGTATACAGAACTCTGGAATATATTTTTCTCTTCAAGAAC
TTATCTCCACTCCTCCCTGGCTAAATGTACAGAGACTTAAGCATCCACAG
TACATTATCACAAGAGTTTTATGATTATGAGTCCATTGCTCCCACAGGCT
ATATCAGATCAGTCATGGTGAATAAAACTGACTAGTGAATGGGACGATAT
ACAGCTCTTCTAGAGTGTTCTAGATTGCCCCTTCCCTCCACGACCCAGGG
CTTAGTACTTCATATACCAGCATTTTACATCAAATGTGCGTGCGCGCCTG
TGTGTGTGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_a19.g1 MSMg01no119_a19.g1 CHROMAT_FILE:
MSMg01no119_a19.g1 PHD_FILE: MSMg01no119_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:05 2005
         (249 letters)



>mm_chr3_37679851_37680499
          Length = 649

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccacccatctgactcttggtgattagatgtaatgtccttatgtggacagaaaggaaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccacccatctgactcttggtgattagatgtaatgtccttatgtggacagaaaggaaaaat 260

                                                                       
Query: 61  tagagctgatgtgaaaaggaattactccacaagcaaatacagaagcccacagcaacttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagagctgatgtgaaaaggaattactccacaagcaaatacagaagcccacagcaacttcc 320

                                                                       
Query: 121 ccagtctatgatagattcgggccacaggacaacacaagtcacagagcgttctggtgatgt 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 ccagtctatgatagattcgggccacaggacaacacaagtcacagagtgttctggtgatgt 380

                                                                       
Query: 181 tggctgcaagcagcgggttttatagccagaaatggagtcatctgaattcctcttctttgt 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggctgcaagcagtgggttttatagccagaaatggagtcatctgaattcctcttctttgt 440

                 
Query: 241 atctta 246
           ||||||
Sbjct: 441 atctta 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)