BAC Information

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BAC

Clone NameMSMg01-119C01
Chromosome3 (Build37)
Map Location 43,882,481 - 43,882,722
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677788, LOC100039264
Downstream geneLOC676484
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119C01.T7 (MSMg01no119_c01.b1)MSMg01-119C01.TJ (MSMg01no119_c01.g1)
ACCAG329825AG329826
length708706
length of high quality
(start - end)
94 (73 - 166)242 (72 - 313)
definitionCHROMAT_FILE: MSMg01no119_c01.b1 PHD_FILE: MSMg01no119_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:11 2005CHROMAT_FILE: MSMg01no119_c01.g1 PHD_FILE: MSMg01no119_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGATCCGCGG
AATTCTCTCCTGCGTACCATCGAATGGCTGAGAAGCACCTCAAAAAATGT
TCATTATCCTTAATCATCAGGGAAATGAAAATTAAAACAACCCTGACTTT
CCATCTCACGCCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGATAGCA
GATGCTGGCGAGGATGCGGAGAAAGAGGAATGCTCCTCCATTGTTGGTGT
GATTGCAAGCTTGTACAACTACTCTGGAAATCAGTCTGGCAGTTCCTCAG
AAAATTGGATATAGTACTACTGGAGCATCCCGTAATACCTCTCCTGGGCA
TATATCCAGACGATGTCTCTATCGGTAAGAAGGACACATGCTCCACTATG
TTTACAGCAGCCCTACTCATAACAGCCCGACCTTGGAATGAACCCAGATG
TCTCTTATCAGAGGAATGGATACAGAAAACGTGGCCATTTACCCAATGCA
GCACCCCCCCAGTATCCCTAAGACCGATTTTCCGATACGCTTAGGTTTAT
GCATGGCTCTGGACGGCCTCATTCCGTGTGCGCTTCCTCCCTCTTTCCGC
ATCTCCCCTCTATGTTCCCCCTGACCCCCGCATATTAGCCTTCAAACCCC
TTTTACCCTTGACACCCCAAACACTCTGCTAAACACCTGAACCTTTTGTA
TATTACCC
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTCTGTCAATAGAATCATCGAACTAGCC
ACAGAGAACATTTAGGAGTGCAGAATATAGATTTTTTTCTTTAGCCATAA
TCATAAGCAGATTACAATATTTGTGCATGATAAGGCTTCACTGGTCTTAG
CTTTAGAAATAAATGGTGATTCTAAATGGAGATGGAGAAGTTCACCAATA
AATAATAAGAGTACGAATGTCCTACGCAAATTGATGGACCTGGAGGGCAT
CTTCCTGAGTGAGGCAACACAATCACAAAAGAACTCGCACAATATGTACT
CACTGACAAGCTGATATTAGCCCACGAACTTATAATACCCAAAACATAAC
ATACAATTCGCCAAACATTTGAAACTCAAGAACAACGAATTCTAAAGCGC
GTACACTTTGTCACTTCCTATAATTGCCAATATAACACTCATGCCATGAG
CTATTTAGACAAAGTGGTTAGCTGAGACGAAAGGATGGACCATTTAGAGA
CCGCCATACTCGGTAATCTATCTCCCACATATCCCCTTTACGCTGACACC
ACCGCATACTCTATTACGATTTTGCTGACCGAACCCCGATACGGTCGTTT
CTTGCCATAACCTGTCGTACCCTTCTTTTACTCAACCCCCCCTTTTTTCT
TTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_c01.g1 MSMg01no119_c01.g1 CHROMAT_FILE:
MSMg01no119_c01.g1 PHD_FILE: MSMg01no119_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:11 2005
         (242 letters)



>mm_chr3_43882345_43882986
          Length = 642

 Score =  437 bits (226), Expect = e-127
 Identities = 238/242 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtctgtcaatagaatcatcgaactagccacagagaacatttaggagtgcagaatataga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agtctgtcaatagaatcatcgaactagccacagagaacatttaggagtgcagaatataga 319

                                                                       
Query: 61  tttttttctttagccataatcataagcagattacaatatttgtgcatgataaggcttcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tttttttctttagccataatcataagcagattacaatatttgtgcatgataaggcttcac 259

                                                                       
Query: 121 tggtcttagctttagaaataaatggtgattctaaatggagatggagaagttcaccaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 258 tggtcttagctttagaaataaatggtgattctaaatggagatggagaagttcaacaataa 199

                                                                       
Query: 181 ataataagagtacgaatgtcctacgcaaattgatggacctggagggcatcttcctgagtg 240
           |||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 198 ataataagagtaggaatgtcctaggcaaattgatggacctggagggcatcttactgagtg 139

             
Query: 241 ag 242
           ||
Sbjct: 138 ag 137


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)