BAC Information

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BAC

Clone NameMSMg01-119E04
Chromosome3 (Build37)
Map Location 135,112,822 - 135,113,172
singlet/doubletsinglet
Overlap geneUbe2d3
Upstream geneLOC100039234, Tacr3, LOC229837, LOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2
Downstream geneManba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477, LOC668868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119E04.T7 (MSMg01no119_e04.b1)MSMg01-119E04.TJ (MSMg01no119_e04.g1)
ACCAG329924AG329925
length693706
length of high quality
(start - end)
---352 (73 - 424)
definitionCHROMAT_FILE: MSMg01no119_e04.b1 PHD_FILE: MSMg01no119_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:21 2005CHROMAT_FILE: MSMg01no119_e04.g1 PHD_FILE: MSMg01no119_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNNNNNCCCCN
NNNNNNCCCNNCCCCNCCCCCCCNNCCCCCCCCTCCCNNNACGCGACCCC
ATCGCCAGCGCCCACATTCATAAAAAAAAATCTTTGGGGGGTGGTCCGGT
CCTTAAAAATAACGGGAAACTGTAAACTTTATTTTATCCCCCACAAAAAA
AGGGGGGAGGGGCGTTTCGTTTTTAAAAACCATTCCCTATTTTTCTTTTT
TTCTCCCCGCCAGGAAAATGTTGTGCTGTGGTTGTTTTCCTAAATTTTTC
TAAAATAAATTCTTTGGCCTTATGGGCTTTTGGGTTGGTGGGGCTACCAC
GGAAGGGGGGGTATATAAAATAAAAGTTTGTGGGGGTAAACGGGGTGAAA
ATTCTCTATAAAAAAAAGGGGTACATTTTTGTGAGAGAGGGGGGTTCTTT
TATAGGGGGGGGGGTAACATCGTTAAAGAAAAAAGTGGGGGGGGGGTAAT
AAAAACACCTTTTTTAAAAAAAAAAAAAAAATAAATTCTGTTAAAAAGAA
TCTCTCTTTTGTGGGGGAATAAAGAAAAGCTGCCCCCGGGGCAGAATTAT
TTTGCCCCCTTCCGTGTGTGAGAAAAATTATAATTTTTTTTTTTAAAAAA
TTGTTCTTCCCTCCTTTCCCCATAAAATATGGCTTTTGCACGG
AATGCAGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTTTTTAGACGTAGGCTTCAAAATATC
TTCTTTATATGCGATTGTTAGAAAATGCTGTATGTTCATATGAAGGCTGA
GACATTTCTTGTGTCAAATATTCCTATAAAATAACTCACTTGCCTAAGGT
AATTAACATTTTTAACTATTATGATTTTCTTTTAAGGTTTTTTTTTCTTT
TAGCGCTTTAGGGTGAGTGCATGTGGAAAGAGATGCACCTTGCCTCCCAA
GGCCAGAAAAGGGCATTAGGTTCCCTGTATCTGGAGTTAGAGGTGTAGTT
ATGAGCTGCCTAGTGTTGAGTGCTGGGAACTACTAGGCCACTTCTCTAGC
CCCTTGTGTGTTTCCCCTATACAATATCATTAAAACTAGTCAAAGGCTAA
AGCGTGCAAGGTGAATTTTATCTTATTGAATACGTTGAAAGTAGTATGGA
AAGATGGGCCTAGTCAGTCATCACTGGAAAGAGAGGTCCATTGCTCATGC
AAACTTTATATGCCCCATTACAGGGGAATGCCAGGGCCAAAAAGCGTGAG
TTGCGTTTGTTATGCGGGATTTTGTCCCTACCCCTTTCCTATTCCTTATT
CCTTCCTCCCCTTTTCCTCCTCTCCTCTCTTTTTTTTTCCCCCTTCTCTT
TCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_e04.g1 MSMg01no119_e04.g1 CHROMAT_FILE:
MSMg01no119_e04.g1 PHD_FILE: MSMg01no119_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:21 2005
         (352 letters)



>mm_chr3_135112622_135113372
          Length = 751

 Score =  644 bits (333), Expect = 0.0
 Identities = 348/353 (98%), Gaps = 3/353 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtttttagacgtaggcttcaaaatatcttctttatatgcgattgttagaaaatgctgta 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 tgtttttagacgtaggcttcaaaatatcttctttatatgcaattgttagaaaatgctgta 260

                                                                       
Query: 61  tgttcatatgaaggctgagacatttcttgtgtcaaatattcctataaaataactcacttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttcatatgaaggctgagacatttcttgtgtcaaatattcctataaaataactcacttg 320

                                                                       
Query: 121 cctaaggtaattaacatttttaactattatgattttcttttaaggtttttttttctttt- 179
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct: 321 tctaaggtaattaacatttttaactattatgattttcttttaagg-ttttttttctttta 379

                                                                       
Query: 180 agcgctttagggtgagtgcatgtggaaagagatgcaccttgcctcccaaggccagaaaag 239
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ag-gctttagggtgagtgcatgtggaaagagatgcaccttgcctcccaaggccagaaaag 438

                                                                       
Query: 240 ggcattaggttccctgtatctggagttagaggtgtagttatgagctgcctagtgttgagt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggcattaggttccctgtatctggagttagaggtgtagttatgagctgcctagtgttgagt 498

                                                                
Query: 300 gctgggaactactaggccacttctctagccccttgtgtgtttcccctatacaa 352
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gctgggaactactaggccacttctctagccccttgtgtgtttcccctatacaa 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 751
Length adjustment: 9
Effective length of query: 343
Effective length of database: 742
Effective search space:   254506
Effective search space used:   254506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)