BAC Information

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BAC

Clone NameMSMg01-119G03
Chromosome3 (Build37)
Map Location 79,520,577 - 79,520,735
singlet/doubletsinglet
Overlap geneRxfp1
Upstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik
Downstream geneTmem144, 1110032E23Rik, EG626797, Gria2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119G03.T7 (MSMg01no119_g03.b1)MSMg01-119G03.TJ (MSMg01no119_g03.g1)
ACCAG330017AG330018
length722715
length of high quality
(start - end)
50 (176 - 225)159 (71 - 229)
definitionCHROMAT_FILE: MSMg01no119_g03.b1 PHD_FILE: MSMg01no119_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:30 2005CHROMAT_FILE: MSMg01no119_g03.g1 PHD_FILE: MSMg01no119_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGA
ATTCTAGACATTGTTACTCACGTCCATAATCTCAGCACTGACAACTGTTG
TGATTTCTAAAGTCAGCCGAGGCTAAACAGTGGGTTCTAATACAGTTAGA
CTGTCTCAAAATGCCACCCATTATCACCTCACTCCATCCCCACCAAATCT
CTCTCCTGTATCCTAACCGTATCTATCCAGTCTCAACACTTTCCAATATC
ACAGCCTAGCACAACTTCAGGTGAATACTATCACTGCTGCCATCTCTACA
TACCACCAAGTTTGGAAATGTCATTTCTGTTAAAATATGCCTACGTCTTC
CTATACACTGAATACTGTTATGACTCACCCACACTATAGACCCCATTTTT
TTTGCCTCACTACTACTCATACCTATCACCCCTACCCGCCGACCCCTCGA
TCTCATCGCGTTTCCCATTTTCTTCACCCCGAGTCTATTTCCTATTGCCC
TGTCACCCCCTGCTTCCCCTTTCCGCATTTCTCACATACTCTTCCTCCTT
GTCCTTTCCCTCTTTTGCCCCTTATTTTACCTTTCCCGTCCTTGCCTCTT
TTCGCCCTGTTCCTTGCTCTTTCCCCATTTTCACCCCTTTCTTTCCCCCT
TCCTTCCCGTTTTTCCCATTTTCCGCTCCTCGTCCCCAATCAAACCCTGA
TTGCCCTTTTTTTTTTTTCCCC
ATGAAGTGATAGCCTGGCGGCGCCTGTCTTTCCCATGGGGTGACCTATAG
AAGGTTTTCCANCATCAGAAGTAGCTGGAACTAGCAAGTAGGGGCAAGCA
CAGCTGCTTGCTCTTTTCGAAGCAGTGATGGTTTCTGTTCTAGGTGAATG
TCTTGGTAAAGAGACTGAAGTTTATGTCACTTGTGCCAGAGGGGCATATC
CATGTTAGCGGTAAGGAATCATTTCTTGACTATGCAGACTACTAAAGAAT
ATCATTGACTTTCTGCAATACTTTCTGGAGTTTTCAAACAAAAATTAGAC
AGTTCAAGCCCGCCTTGTACTAGTTCCAGACAACCACACCATATTTTCAG
GACGTCTGTTTTCCTTCCACCACTCCACGAACCACATTTCCCGACGTCAC
CGGCAACTCTCATATCTATTTATACTTCGTATGATACCCTCGCTCTGCCT
ATTGCGACCCCACCCATCACCTCCGCTGTGCCCAATTCCCCCCTGATCTC
TTTACTGCCTCACCATACTACGCAATACCCTCGATTATGGACCTTCGCTC
CCTTCCACATTTTCCCTTTTTCCCCCAATTTCCATTTTCCATCCCACCCC
CCCCCTGTGTTTTTGTCTTATTAACCGTTCGCCTTCCCCCCATCCGTTCC
TTTTTCCCCCTTTGTCCGTTCTTTTCCCGTTCTCTTGCCCCCTCCTCCGC
CCTTCTCCTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_g03.g1 MSMg01no119_g03.g1 CHROMAT_FILE:
MSMg01no119_g03.g1 PHD_FILE: MSMg01no119_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:30 2005
         (159 letters)



>mm_chr3_79520377_79520937
          Length = 561

 Score =  269 bits (139), Expect = 6e-77
 Identities = 154/159 (96%), Gaps = 2/159 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtagctgga-actagcaagtagggg-caagcacagctgcttgctcttttcgaagcagtga 58
           ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 gtagctggacactagcaagtagggggcaagcacagctgcttgctcttttcgaagcagtga 260

                                                                       
Query: 59  tggtttctgttctaggtgaatgtcttggtaaagagactgaagtttatgtcacttgtgcca 118
           ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 tggtttctgttctgggtgaatgtcttgggaaagagactgaagtttatgtcacttgtgcca 320

                                                  
Query: 119 gaggggcatatccatgttagcggtaaggaatcatttctt 157
           |||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 gaggggcatatccatgttagtggtaaggaatcatttctt 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 561
Length adjustment: 8
Effective length of query: 151
Effective length of database: 553
Effective search space:    83503
Effective search space used:    83503
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)