BAC Information

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BAC

Clone NameMSMg01-119M09
Chromosome3 (Build37)
Map Location 65,508,726 - 65,508,890
singlet/doubletsinglet
Overlap genenone
Upstream gene4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866
Downstream geneCcnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119M09.T7 (MSMg01no119_m09.b1)MSMg01-119M09.TJ (MSMg01no119_m09.g1)
ACCAG330309AG330310
length722714
length of high quality
(start - end)
166 (72 - 237)196 (72 - 267)
definitionCHROMAT_FILE: MSMg01no119_m09.b1 PHD_FILE: MSMg01no119_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:01 2005CHROMAT_FILE: MSMg01no119_m09.g1 PHD_FILE: MSMg01no119_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGAGCCGCGGAA
TTCAAACACCATCCCAATGGTTATACAAACACCTAAAAAGTTGGCAGTGT
TTATGAATGTATTCCTAAACATAAAGTTATACTGTATAAAAGAAAAACTA
CTATACTAATATAACATGTATTAAAAATATGTTTTAAAGACAAGGTAGAA
GAAATGGATATGTCTATTAAAACAAATACAAAGACTACAACAAACAAAAA
TCCTGGCTCAAAAATCCAGGAAATTCATGAAAATGCGAAAAGACCAAATT
TACAAATTATTGAACTACAGGAAAGGGAAGAAACCAAGTCAAAGCGCCAT
AATATATTTTTAACAAAATCACAGAAGAAAAATTCCCCAATCTAAAAGAG
ATGTGTCTATCTAACTACAATAAGCATAAAAAACTTATAAAAGAGTACAA
CAGAAAAGCTATTCCCCATGATACATAATAATCAAAATACTGAATATACT
GAACACAGATACAATCTTAATAGCCTTTGGCGAATAATACCAAGTAACAT
ACAGGTACATTCACTAGATTAGCCGTTTTCAACATTTGCACTACAATCCT
CATTAGACCCTCTTAACACACTGTTTATCTCTTATAGCACCAAAAATACA
CCTACGAAGCACGAATAACAATAATTTTATAGTTGGAAGTCACTATAACA
TGAGGAATTGTATTAATGCGCA
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATAAATGTTTTGGTGAGGAGCTTGAGGAC
TCGACTTACAAGACTAATTTGAAGTGGCAGAGAATTTCAAGTACAACTAG
TTTGTTAAATATGTAAAAAAAAAAAAAAAGTAGGCAATATCTAATACCAA
GTGGGTCATTTCAGCAGAGAGATAAGAAACTTTAAGAATCACGTACAAGG
GCTGGAGAGATGGCTCATAGCTTAAGAGGACTGACTGCTCTTCCAGAGGA
CCCAGGTTCAATTCCCAGCATCCACATGGCACCACACAACTCTCTGCAAC
TCCAGATATCCACATGTGTAGACAAAACACCAACGCACATAACATATACC
TAACCTAAAACACTAACAGCTCTCTTCAAAATTAACACATATTATCTAAA
ATGAATCTTTGTATACTCTCACGGCTGTGGAACCCATCAGCGCATTGCAC
ACTATTAGTGATTCCTGAGGCTGAAACACCACGAGTGAAGGAAAGGCGTA
GCATTTGAACGCCACACGATTTCACAATGACATCGTTATACCTTATTGCC
ACATTCCAAACCGTGAATCTCATAATTTGGGACAATACCCAGCACGTTGC
AATTCTTTCTCTCCCTTTCTCTCCCTCTCTCTCCTTCTCCCCATCTCCCG
CTTTACACATACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_m09.b1 MSMg01no119_m09.b1 CHROMAT_FILE:
MSMg01no119_m09.b1 PHD_FILE: MSMg01no119_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:01 2005
         (166 letters)



>mm_chr3_65508526_65509092
          Length = 567

 Score =  288 bits (149), Expect = 1e-82
 Identities = 161/165 (97%), Gaps = 1/165 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatacaaacacct-aaaaagttggcagtgtttatgaatgtattcctaaacataaagttat 59
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tatacaaacacctaaaaaagttggcagtgtttatgaatgtattcctaaacataaagttat 306

                                                                       
Query: 60  actgtataaaagaaaaactactatactaatataacatgtattaaaaatatgttttaaaga 119
           |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 305 actgcataaaagaaaaactactatactaatataatatgtattaaaaatatgttttaaaga 246

                                                        
Query: 120 caaggtagaagaaatggatatgtctattaaaacaaatacaaagac 164
           |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 245 caaggtagaagaaatggatatgtctattaaaacaaaaacaaagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 567
Length adjustment: 8
Effective length of query: 158
Effective length of database: 559
Effective search space:    88322
Effective search space used:    88322
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)