Query= MSMg01no119_n23.b1 MSMg01no119_n23.b1 CHROMAT_FILE:
MSMg01no119_n23.b1 PHD_FILE: MSMg01no119_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:08 2005
(570 letters)
>mm_chr3_144846270_144847239
Length = 970
Score = 681 bits (352), Expect = 0.0
Identities = 373/380 (98%)
Strand = Plus / Minus
Query: 1 agtttattgcaaccctctagaagatgaacatttggaagtggagagaacatggctggattt 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 agtttattgcaaccttctagaagatgaacatttggaagtggagagaacatggctggattt 521
Query: 61 gacattgtcaggagcagtgtagacagaagagcacccagctcgcctctgatgtcttatggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gacattgtcaggagcagtgtagacagaagagcacccagctcgcctctgatgtcttatggg 461
Query: 121 gaagtgttaccatgacagaaccccacagagatgtctccccagaattatccaacacccaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gaagtgttaccatgacagaaccccacagagatgtctccccagaattatccaacacccaag 401
Query: 181 gtcagatgccatttgctggactgtaagagggatgtagagttatccacagggctaaagtca 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 400 gtcagatgccatttgctggactgtaagagggatgtagagttatccacagagctaaagtca 341
Query: 241 ctctggtctccctggtatgagccagagtcgaggccacactgggatggataataccgggtg 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 340 ctctggtctccctggtataagccagagtcgaggccacactgggatggataataccaggtg 281
Query: 301 gctctgattacagctcatcgatgctcttagctatcttcctcctgggtattgatgtctctc 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 280 gctctgattacagctcatcgatgctcttagctatcttccttctgggtattgatgtctctc 221
Query: 361 ctccccctgggtattgatgt 380
|||| |||||||||| ||||
Sbjct: 220 ctcctcctgggtattaatgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_n23.g1 MSMg01no119_n23.g1 CHROMAT_FILE:
MSMg01no119_n23.g1 PHD_FILE: MSMg01no119_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:08 2005
(551 letters)
>mm_chr3_144750144_144751100
Length = 957
Score = 949 bits (491), Expect = 0.0
Identities = 538/561 (95%), Gaps = 15/561 (2%)
Strand = Plus / Plus
Query: 6 aattctcccttcgaattttataatttttatggcttaattcttttaatctagtgacatc-- 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 aattctcccttcgaattttataatttttatggcttaattcttttaatctagtgacatcat 256
Query: 64 -cagttgcgtttgttttcctgaaaatgccacacttttattcgtgtgtgtgtgtgtgtgtg 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ccagttgcgtttgttttcctgaaaatgccacacttttattcgtgtgtgtgtgtgtgtgtg 316
Query: 123 tgtgtgtgtgtgtgt------ttcacattccacattctctcttcccatttccctggagtt 176
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tgtgtgtgtgtgtgtgtgtgtttcacattccacattctctcttcccatttccctggagtt 376
Query: 177 ggatacctagctggtgtgggcacagtaaacattacttctttgtggctttggttcacttcc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggatacctagctggtgtgggcacagtaaacattacttctttgtggctttggttcacttcc 436
Query: 237 tcaaagagtgcaggggataagtagggactcagtaacttttgtctccgtcatggggaaagg 296
|||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 437 tcaaagagtgcaggagataagtagggacacagtaacttttgtctccatcatggggaaagg 496
Query: 297 gggggaaagttacaattagcactgacctggagatgctaataggatggattt-----atct 351
|| | |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 497 ggagaaaagttacaattagcactgacctggagatgctaataggatggatttcatttatct 556
Query: 352 caccatctcaatccctaagtctcctgaggtttgtcctacctctttctcaagaaaataaga 411
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 caccatctcaatctctaggtctcctgaggtttgtcctacctctttctcaagaaaataaga 616
Query: 412 tatcttggactctttaaaaccctttgtacccccaccccatgatacattgaagaaaaaaaa 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tatcttggactctttaaaaccctttgtacccccaccccatgatacattgaagaaaaaaaa 676
Query: 472 a-gagttaaaacctgatgagggagtagggaagaatggttttcaatcatttggagtcagtg 530
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aagagttaaaacctgatgagggagtagggaagaatggttttcaatcatttggagtcagtg 736
Query: 531 tttacctccgccatcttcctg 551
|||||||| ||||||||||||
Sbjct: 737 tttacctctgccatcttcctg 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 957
Length adjustment: 10
Effective length of query: 541
Effective length of database: 947
Effective search space: 512327
Effective search space used: 512327
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
