BAC Information

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BAC

Clone NameMSMg01-119P17
Chromosome3 (Build37)
Map Location 19,157,530 - 19,157,986
singlet/doubletsinglet
Overlap genePde7a
Upstream geneLOC622921, LOC100040153, Armc1, Mtfr1
Downstream geneDnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119P17.T7 (MSMg01no119_p17.b1)MSMg01-119P17.TJ (MSMg01no119_p17.g1)
ACCAG330465AG330466
length717727
length of high quality
(start - end)
397 (44 - 440)457 (70 - 526)
definitionCHROMAT_FILE: MSMg01no119_p17.b1 PHD_FILE: MSMg01no119_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:17 2005CHROMAT_FILE: MSMg01no119_p17.g1 PHD_FILE: MSMg01no119_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAAT
TCACTCGATATGCCCTCACTGATAAGTGGATATTAGCCTAGAAACATAGA
ACACCCAGGATACAATTTGCAAAACAAGAAAATCAAGAAGAGGGAAGACC
AATGGGTGGATACTTCATTCCTCCTTAGAATAGGGAATAAAATACCCATG
AAAGGAGTTATAGAGACTAAGTTTGGAGCTAAGATGAAAGGATGGACTAT
CCAGAGACTACCCGACCTGGGGATCCATCCCATAATCAGCTACCAAACCC
AGACACTATTGCATATGCCATATAGATTTTGCTGAAGGGACCCTGTTATA
GCTGTCTCATATCTCGCGTCTCGTATGAGGCTCTGCCAGTGCCTGGAAAA
TACAGAAGTGAATGCTCACAGTCATCTATAAGATGGAACACTGGGCCCCC
TATGGAGAAGCTAGAGAAAGCACCCAAGGAGCTGAAGGGGTCTGCAACCC
TATAGGTGGAACAACAATATGAACTATACAGTACCCCCAGACTCATATCT
CTAGCTGCATATGTAGTAGAAGATGGCCTAGTCGGTCATCACAGGTAAGA
GAGGCCTCTTGCTATTGTTAGCTTATATGTTCCGGTACAGGGGAATGTCA
GGGCCAAGAATTATGAGTGGCCGGATAGCGGAGTATGTCGCACGCACGGT
TTAGCCTACATCCCTTT
TGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGAAATCACACATGAACCCATTCTGTGGATG
CAGAAATTGGGTTCTGGTAGATTAAATCACATTTCCAAGCCTGTGTTGCT
GCAGCTGACAAGCCAGTCCTTAAACCCACGGGATCCAAAAGCAGTCTTTT
GTTAAAGCTGTCGCATCACTCATCCTCAGAGCCAGCCTGCCCTTTCCTGT
CCTCCTGAAACTCTGACCTCCTTGAAGGATCTTCTTGCTCTGCGTCCTTA
AGGAAGACTTGCTTCATGCACTGTGACTCCATTTATATCTACCAAGGCCT
CTGTTACATGGTTACTCTTCATTGTGACCAAGGTTTGCTGAACACGTTAG
ACCCAGGACATGCCAGTGCACAAAGTTTATCTTCCCAAATACAAATACAA
CAAACACAGAACTCCTTTCTACAGAGGAGGGTTAGAAGCTATAGAGTACG
TTAAGAGGAATGGGGAATGGAGGGATGCGATGTTTTCCCCCCTTTTTCCC
TTTTCCCTTTTCCTCCCCCTTTTGTCCTCGCATTACTCTTTTTTCCCCGT
TTTTTTCCCCCCTTTTTTTTCTCTTTTCATTCCCTTTATTTACCGCTCAT
TTTATCCCCCCCTTATTCCTTATATTTTTCATTTCTCCCCCTTTTTTTTT
TTCTTCCTTTCTTCCCCCTTTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_p17.g1 MSMg01no119_p17.g1 CHROMAT_FILE:
MSMg01no119_p17.g1 PHD_FILE: MSMg01no119_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:17 2005
         (457 letters)



>mm_chr3_19157330_19158186
          Length = 857

 Score =  876 bits (453), Expect = 0.0
 Identities = 456/457 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaaatcacacatgaacccattctgtggatgcagaaattgggttctggtagattaaatca 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaaatcacacatgcacccattctgtggatgcagaaattgggttctggtagattaaatca 260

                                                                       
Query: 61  catttccaagcctgtgttgctgcagctgacaagccagtccttaaacccacgggatccaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catttccaagcctgtgttgctgcagctgacaagccagtccttaaacccacgggatccaaa 320

                                                                       
Query: 121 agcagtcttttgttaaagctgtcgcatcactcatcctcagagccagcctgccctttcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcagtcttttgttaaagctgtcgcatcactcatcctcagagccagcctgccctttcctg 380

                                                                       
Query: 181 tcctcctgaaactctgacctccttgaaggatcttcttgctctgcgtccttaaggaagact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctcctgaaactctgacctccttgaaggatcttcttgctctgcgtccttaaggaagact 440

                                                                       
Query: 241 tgcttcatgcactgtgactccatttatatctaccaaggcctctgttacatggttactctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcttcatgcactgtgactccatttatatctaccaaggcctctgttacatggttactctt 500

                                                                       
Query: 301 cattgtgaccaaggtttgctgaacacgttagacccaggacatgccagtgcacaaagttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cattgtgaccaaggtttgctgaacacgttagacccaggacatgccagtgcacaaagttta 560

                                                                       
Query: 361 tcttcccaaatacaaatacaacaaacacagaactcctttctacagaggagggttagaagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttcccaaatacaaatacaacaaacacagaactcctttctacagaggagggttagaagc 620

                                                
Query: 421 tatagagtacgttaagaggaatggggaatggagggat 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatagagtacgttaagaggaatggggaatggagggat 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)