Query= MSMg01no120_c12.b1 MSMg01no120_c12.b1 CHROMAT_FILE:
MSMg01no120_c12.b1 PHD_FILE: MSMg01no120_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:30 2005
(547 letters)
>mm_chr3_3760142_3761088
Length = 947
Score = 1027 bits (531), Expect = 0.0
Identities = 543/547 (99%)
Strand = Plus / Minus
Query: 1 aaacacacagatgttacagttggctaaatttctaccaattatcaaattaatttttacaaa 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 747 aaacacacagatgttacagttggctaaatttctaccaattatcaacttaatttttacaaa 688
Query: 61 catataatacttatctcatttcagattttgctctgctaagaaaatttattttaaagaaaa 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 687 catataatacttatctcatttcagattttgctctactaagaaaatttattttaaagaaaa 628
Query: 121 atgttttatccagtccacttcctgccataatcaaggtctttctaacctgctctctgaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 627 atgttttatccagtccacttcctgccataatcaaggtctttctaacctgctatctgaagg 568
Query: 181 ttatgcttcagtgaataattcagcaggttagtgaaactctggcagcaaagaaagtgctaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttatgcttcagtgaataattcagcaggttagtgaaactctggcagcaaagaaagtgctaa 508
Query: 241 tcttagatggaagctgtgagggatattaagaaacaattgctgaaagtgacatatttaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tcttagatggaagctgtgagggatattaagaaacaattgctgaaagtgacatatttaata 448
Query: 301 gagaaagattacgctgtgctacatctatttaatttgaattgaataaattttgtcagtatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gagaaagattacgctgtgctacatctatttaatttgaattgaataaattttgtcagtatt 388
Query: 361 tgatgagagccagactggaaattgtgtgaaactcatagtgtcagtaaagactaggcaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgatgagagccagactggaaattgtgtgaaactcatagtgtcagtaaagactaggcaaga 328
Query: 421 atataaaagaccccaaaatatgttattgtgactttcaaaatttctcaatcatttgagaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atataaaagaccccaaaatatgttattgtgactttcaaaatttctcaatcatttgagaga 268
Query: 481 atgctgaaggaactagaagttttattaaatgttttatttattcaaattaaagcagtagaa 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atgttgaaggaactagaagttttattaaatgttttatttattcaaattaaagcagtagaa 208
Query: 541 agcaatt 547
|||||||
Sbjct: 207 agcaatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_c12.g1 MSMg01no120_c12.g1 CHROMAT_FILE:
MSMg01no120_c12.g1 PHD_FILE: MSMg01no120_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:30 2005
(621 letters)
>mm_chr3_3613867_3614887
Length = 1021
Score = 1178 bits (609), Expect = 0.0
Identities = 618/621 (99%)
Strand = Plus / Plus
Query: 1 aaatcgagagtcccctaacttaggttcaaaccagtgaaataagattgctgttgctggtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatcgagagtcccctaacttaggttcaaaccagtgaaataagattgctgttgctggtgg 260
Query: 61 aaataaaaataaaaagcttttatgcaatgtccaaaatgtgtactatatcctttcatgtta 120
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 261 aaataaaaataaaaagcttttatgcaatgtccaaaatgtgtagtatatcctttcatgtaa 320
Query: 121 atggagggtgacagtttggatctgatgttgaatgctacaattttatttgagatgaaaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggagggtgacagtttggatctgatgttgaatgctacaattttatttgagatgaaaatt 380
Query: 181 tatataaatgaaatatgcatacgcatgtatatagatgtttatttgactgtataggatata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatataaatgaaatatgcatacgcatgtatatagatgtttatttgactgtataggatata 440
Query: 241 tactcttcattcatatattaggaatcatagattataatatacacccatatgcaattctgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tactcttcattcatatattaggaatcatagattataatatacacccatatgcaattctgt 500
Query: 301 ctatttatagccttgtccacactgtattgtcctctagttctgtgttctgtcactggagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctatttatagccttgtccacactgtattgtcctctagttctgtgttctgtcactggagag 560
Query: 361 tagtgtttgaaaaggagggaaagcttgatgttcaaatactagggttcaacatctgggcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagtgtttgaaaaggagggaaagcttgatgttcaaatactagggttcaacatctgggcct 620
Query: 421 tacatgttctaagccagtgttctattcatgagccatattatttgttttaattttaataaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacatgttctaagccagtgttctattcatgagccatattatttgttttaattttaataaa 680
Query: 481 agataacacacggtttgttttttaaaaaactgagattgaaattgcttttcttgattttac 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaataacacacggtttgttttttaaaaaactgagattgaaattgcttttcttgattttac 740
Query: 541 ttttatcttttgagatggactttagctatgtaatccaggctagcctataactcccgatcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttatcttttgagatggactttagctatgtaatccaggctagcctataactcccgatcc 800
Query: 601 tcatgtctccgcctcctggct 621
|||||||||||||||||||||
Sbjct: 801 tcatgtctccgcctcctggct 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
