BAC Information

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BAC

Clone NameMSMg01-120J07
Chromosome3 (Build37)
Map Location 106,196,945 - 106,197,573
singlet/doubletsinglet
Overlap geneBC051070
Upstream gene1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696
Downstream gene2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120J07.T7 (MSMg01no120_j07.b1)MSMg01-120J07.TJ (MSMg01no120_j07.g1)
ACCAG330914AG330915
length707709
length of high quality
(start - end)
554 (48 - 601)626 (73 - 698)
definitionCHROMAT_FILE: MSMg01no120_j07.b1 PHD_FILE: MSMg01no120_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:04 2005CHROMAT_FILE: MSMg01no120_j07.g1 PHD_FILE: MSMg01no120_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTTGAGCATATTTGCTGGCCCTTTAAGTTGAAAAATCTTCAT
TCTCATCTACTCCTAGTATCAGTAGGTTTGGTCTTCTTTTTGTGTCCTGG
ATTTCCTAGATGTGTTGAGTTAGGATCTTTTTGCATTTTGCATTTTCTTT
GATTGTTGTTCCCATGTTCTCTATGGAATCTTCTGCACCTGAGATTCTCT
CTTCCATCTCTTGTATTCTATTGTTGATGCTCACATCAATGTTTCCAGAT
TTCTTTCCTAGGGTTTCTTTCTCCAGCATTGCCTCAGTTTGGGTTTTCTT
TATTGTGTCTACTTCTCTTTTTAAGTCTTGTATGGTTTTGTTCATTTCCA
TGACCCGTTTGGATGTGTTTTCCTGTTTTTCTTTAAGGACTTCTAACTGT
TTGGTTGTGTTTCCCTGCTTTTCGTTAAGGACTTGTAACTCTTTAGCAGT
GTTCTCCTGCATTTCTTTAAGTGAGTTATTAAAGTCCTTCTTGTCCTCTA
CCATCATCATGAGATATGCTTTTAAATCTGGGTCTAGCTTTTCCGGTGTG
TTGGGGTGTCCAGGACTGGTTGAAGTGGGAATGCTGCGTTCTGATGATGG
TGAGTGGTCTTGCTTTCTGTTAGTAAGATTCGTAAGTTTGCCTTTAGCCA
TCTGGTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCCCGAGGAATTCAAAACAAAGACAGCTGCATTCAAT
ACATAGAGCATTAGAATCAGCAGCAATAAAATAACTAGAGAGTTCACCAA
AAGCAGAGATTGTACATGGATACCCTGAGAACCACAGAGACTTAATCTAG
GGATAGGTCCTGATGAAAGGCTCAGAGGCAGATATTAATGAATAAAATAT
CTTTATCTCATTGTGTTTAGATTACTGAAGCATTATTATGATTTCTTTGG
GTTCCTTTAGTTTTATCACCATGGTGTCCACTCCTGAGAACCGCCATTCT
TTCATTACTTCAATCATAAAGTTCCTGCGGAAGTATGAATTTGATGGACT
TAATTTGGCTTGGCAGTACCCTGGCTGTTATGGAAGTCCTCCTAGGGACA
AACATCTCTTTACTATCCTGATGCACGTAAGGAAAGCAGGAATAAATACC
TTTTTTATTCCTAGAAGATTTGAATTTTTCTTTCTAAGGGGAATTATTAT
ATGACAAAACTAAAGATAAATTTAGATTTATAAAGTATTATCCTTTCAAA
AATCCTTAAATATAATTACTTCATTCGACAAGGTAAATGCTAGTTGTTTT
TACCACATGTAGTTTACAAAACACAAGATTTATTTATTTTGGTATTAATA
TATGGGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_j07.g1 MSMg01no120_j07.g1 CHROMAT_FILE:
MSMg01no120_j07.g1 PHD_FILE: MSMg01no120_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:04 2005
         (626 letters)



>mm_chr3_106196745_106197774
          Length = 1030

 Score = 1127 bits (583), Expect = 0.0
 Identities = 617/629 (98%), Gaps = 4/629 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcaaaacaaagacagctgcattcaatacatagagcattagaatcagcagcaataaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 attcaaaacaaagacagctgcattcaatacatagagcattagaatcagcagcaataaaat 770

                                                                       
Query: 61  aactagagagttcaccaaaagcagagattgtacatggataccctgagaaccacagagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 aactagagagttcaccaaaagcagagattgtacatggataccctgagaaccacagagact 710

                                                                       
Query: 121 taatctagggataggtcctgatgaaaggctcagaggcagatattaatgaataaaatatct 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 taatctggggataggtcctgatgaaaggctcagaggcagatattaatgaataaaatatct 650

                                                                       
Query: 181 ttatctcattgtgtttagattactgaagcattattatgatttctttgggttcctttagtt 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ttatctcagtgtgtttagattactgaagcattattatgatttctttgggttcctttagtt 590

                                                                       
Query: 241 ttatcaccatggtgtccactcctgagaaccgccattctttcattacttcaatcataaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ttatcaccatggtgtccactcctgagaaccgccattctttcattacttcaatcataaagt 530

                                                                       
Query: 301 tcctgcggaagtatgaatttgatggacttaatttggcttggcagtaccctggctgttatg 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tcctgcggaagtatggatttgatggacttaatttggcttggcagtaccctggctgttatg 470

                                                                       
Query: 361 gaagtcctcctagggacaaacatctctttactatcctgatgcacgtaaggaaagcaggaa 420
           |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 469 gaagccctcctagggacaaacatctctttactatcctgatgcatgtaaggaaagcaggaa 410

                                                                       
Query: 421 taaatacc-ttttttattcctagaagatttgaatttttctttctaaggggaattattata 479
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 taaatacctttttttattcctagaagatttgaatttttctttctaaggggaattattata 350

                                                                       
Query: 480 tgacaaaactaaagataaatttagatttataaagtattatcc-tttcaaaaatccttaaa 538
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 349 tgacaaaactaaagataaatttagatttataaagtattatccttttaaaaaatccttaaa 290

                                                                       
Query: 539 tataattacttcattcgacaaggtaaatgctagttg--tttttaccacatgtagtttaca 596
           ||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||
Sbjct: 289 tataattacttcattcgacaaggtaaatgctagttgtttttttaccacatatagtttaca 230

                                        
Query: 597 aaacacaagatttatttattttggtatta 625
           ||||| |||||||||||||||||||||||
Sbjct: 229 aaacataagatttatttattttggtatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1030
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1020
Effective search space:   628320
Effective search space used:   628320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)