BAC Information

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BAC

Clone NameMSMg01-120J15
Chromosome3 (Build37)
Map Location 57,261,976 - 57,262,474
singlet/doubletsinglet
Overlap geneWwtr1
Upstream geneLOC100040139, LOC666585, Tm4sf1, LOC383862, Tm4sf4
Downstream geneCommd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216, 4921539H07Rik, Tsc22d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120J15.T7 (MSMg01no120_j15.b1)MSMg01-120J15.TJ (MSMg01no120_j15.g1)
ACCAG330929AG330930
length705711
length of high quality
(start - end)
517 (47 - 563)244 (75 - 318)
definitionCHROMAT_FILE: MSMg01no120_j15.b1 PHD_FILE: MSMg01no120_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:06 2005CHROMAT_FILE: MSMg01no120_j15.g1 PHD_FILE: MSMg01no120_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGATTTCTAGCTTGGTCCAGGAAGTGATTTACAGTTTCAAAAGC
TGTATTGATAACAGTAGTAACAAATGCTTTAAAACTTATTTAACTTGAGC
TTCAAAAAAAAAAAAAATCATTGTATAGATAGTAATTTTCTCCTGTAGGG
AATACAGTGTAGTTTGGAATCCATGCTGGCTCTGATGGCTTCTCTCATTC
TGTGTTTACAAGGGCACAGAGTACCAATGTTGCCACCGTTCATCATTTTC
CTGCTTAGCAGCTCCATTCTGTGAGCAGGAGAGTAACTTCAACATCTGTC
ACAATTCTTGCATGACAGATCGTGTGAAAGAGACCAGTTTGGTCCCAATA
TGAATGATTACAGAACAAAATTGTTTTTTTTTTTTAATTGCAGCTTGATT
TTTTTTTCAAAATGCAGCTTAAAATTTGATGTTTGTTTTATATATATATA
TATATATATATATATATATATATATATATATAAACTCTGTAATTTTGTAG
CTATTACAGAGGGTAGCCAAATGTTTTTGATAAATCAGTGGCAACTATAT
TTTCGTCTTTTGGACCTGATTCTGAAAACATCAGGCCAACTAAGTCGCAG
ACTGATGAACCATGAATTTTGTGTGCTGCGCTTTGAATTCTGAGGCTTTA
TTACN
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGTCTCAAAAGGAATTCTCACCTGAGGAATACCGAATGG
CAGAGAAGTACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGG
AAATCAGCCTGGCGGTTCTTTATATTACTGGACATAGTACTACCGGAGGA
TCCAGCAATACCTCTCCTGAGCATATATCCAGAAGATGCCCCAACAGGTA
AGAAGGACACATGCTCCACTCTGTTCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTG
AGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGAT
AAGTGTATATTAGTCCATAACCTAGGATACCCAAGATATAAGATACTATT
TCCCTAACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_j15.b1 MSMg01no120_j15.b1 CHROMAT_FILE:
MSMg01no120_j15.b1 PHD_FILE: MSMg01no120_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:06 2005
         (517 letters)



>mm_chr3_57261834_57262750
          Length = 917

 Score =  915 bits (473), Expect = 0.0
 Identities = 493/501 (98%), Gaps = 4/501 (0%)
 Strand = Plus / Minus

                                                                       
Query: 19  agcttggtccaggaagtgatttacagtttcaaaagctgtattgataacagtagtaacaaa 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 agcttggtccaggaagtgatttacagtttcaaaagctgtattgataacagtagtaacaaa 582

                                                                       
Query: 79  tgctttaaaacttatttaacttgagcttcaaaaaaaaaaaaaatcattgtatagatagta 138
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 581 tgctttaaaacttatttaacttgagcttc--aaaaaaaaaaaatcattgtatagatagta 524

                                                                       
Query: 139 attttctcctgtagggaatacagtgtagtttggaatccatgctggctctgatggcttctc 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 attttctcctgtagggaatacagtgtagtttggaatccatgctggctctgatggcttctc 464

                                                                       
Query: 199 tcattctgtgtttacaagggcacagagtaccaatgttgccaccgttcatcattttcctgc 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tcattctgtgtttacaagggcacagagtaccaatgttgccaccgttcatcattttcctgc 404

                                                                       
Query: 259 ttagcagctccattctgtgagcaggagagtaacttcaacatctgtcacaattcttgcatg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ttagcagctccattctgtgagcaggagagtaacttcaacatctgtcacaattcttgcatg 344

                                                                       
Query: 319 acagatcgtgtgaaagagaccagtttggtcccaatatgaatgattacagaacaaaattgt 378
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 343 acagatcgtgtgaaagagaccagtttggtcacaatatgaatgattacagaacaaaattgt 284

                                                                       
Query: 379 ttt--ttttttttaattgcagcttgatttttttttcaaaatgcagcttaaaatttgatgt 436
           |||  |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 283 tttgtttttttttaattgcagcttggtttttttttcaaaatgcagcttagaatttgatgt 224

                                                                       
Query: 437 ttgttttatatatatatatatatatatatatatatatatatatatatataaactctgtaa 496
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ttgttatatatatatatatatatatatatatatatatatatatatatataaactctgtaa 164

                                
Query: 497 ttttgtagctattacagaggg 517
           |||||||||||||||||||||
Sbjct: 163 ttttgtagctattacagaggg 143



 Score = 89.7 bits (46), Expect = 5e-22
 Identities = 49/50 (98%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                             
Query: 439 gttt-tatatatatatatatatatatatatatatatatatatatatataa 487
           |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gtttatatatatatatatatatatatatatatatatatatatatatataa 220


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 95
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 7
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)